Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15j08r
         (917 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.7  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.9  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   3.9  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   3.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   6.8  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   6.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 555  STRNGNA*LTSYYVRCGLEILNLDNLNY*QSTSCRHIKMMRCG 683
            S  NG A LT Y +       NLD L   +  +   +K + CG
Sbjct: 1426 SGHNGGASLTGYTLHYRTAHGNLDELQLSRHATSHELKGLLCG 1468


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +3

Query: 555  STRNGNA*LTSYYVRCGLEILNLDNLNY*QSTSCRHIKMMRCG 683
            S  NG A LT Y +       NLD L   +  +   +K + CG
Sbjct: 1422 SGHNGGASLTGYTLHYRTAHGNLDELQLSRHATSHELKGLLCG 1464


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 645 IVSSLDYLNSISLNHNEHNKKLVTHYHCVYY 553
           I+SSL   N+ + N+N + K    +Y  +YY
Sbjct: 81  IISSLS--NNYNYNNNNYKKLYCNNYRKLYY 109


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 645 IVSSLDYLNSISLNHNEHNKKLVTHYHCVYY 553
           I+SSL   N+ + N+N + K    +Y  +YY
Sbjct: 81  IISSLS--NNYNYNNNNYKKLYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 645 IVSSLDYLNSISLNHNEHNKKLVTHYHCVYY 553
           I+SSL   N+ + N+N + K    +Y  +YY
Sbjct: 81  IISSLS--NNYNYNNNNYKKLYCNNYKKLYY 109


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 886 KLLKNNMSLEYFYLDLPHSELSD 818
           KLL N   LE    DLPH E  D
Sbjct: 264 KLLLNRYYLERLSNDLPHLEEFD 286


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 630 DYLNSISLNHNEHNKKL 580
           +Y N  + N+N +NKKL
Sbjct: 99  NYNNKYNYNNNNYNKKL 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,271
Number of Sequences: 438
Number of extensions: 5158
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)