Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15j08f
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   1.7  
SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase |Sch...    26   4.0  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    26   5.3  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    26   5.3  
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po...    25   9.3  

>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 121

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +1

Query: 406 LYNYDDKSCYFLKNCFADSTKAVLKKIIVSDCSINQIDISLN 531
           LY  D ++ Y+LKNCF      ++  +  ++  IN+  I +N
Sbjct: 59  LYTTDTRTHYYLKNCFRILEWEIVSHVGGNELLINRRVIDVN 100


>SPAC15E1.05c |||ethanolamine-phosphate cytidylyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 427 SCYFLKNCFADSTKAVLKKIIVSDCSINQIDISLN 531
           S  ++K CF +    V   I  +D SI  +DISL+
Sbjct: 280 SSKYIKLCFDEQISKVYYPIFSTDVSIPALDISLS 314


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 172 AEFMGYC*SYIAAKWKRLY*ESFSTFFQDFVNLCQAENWPNNTT-TDIELRN 324
           A +MG+  + IA +  +      STF Q+ +NL   E W N    T +E RN
Sbjct: 599 AGYMGHL-TIIADEVVKFVEHYSSTFDQELLNLINDEKWQNFVNKTLVETRN 649


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +1

Query: 235 SFSTFFQDFVNLCQAENWPNNTTTDIELRNAFKIAQHIEKCLEKLQ 372
           ++  FF  F  LC +   P+    D ELRN  K+ +   + +E +Q
Sbjct: 268 NYGQFFTLFDRLCSSYRQPDQELFDAELRNE-KLQEQRIRFMETVQ 312


>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 270 EINEILKKSRKTLSVQSLPFRSDVTSTITHEF 175
           EI +I K+    ++   +PFR  V  +  HEF
Sbjct: 91  EIQKIFKEIHVVVANAGMPFRRSVLDSPPHEF 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,832
Number of Sequences: 5004
Number of extensions: 48295
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)