Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15j08f
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-8|AAA28214.1|   94|Caenorhabditis elegans Hypothetical pr...    42   3e-04
AF303260-1|AAG50218.1|   94|Caenorhabditis elegans 3H949 protein.      42   3e-04
Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical pr...    32   0.40 
AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical ...    31   0.70 
AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical ...    31   0.93 
U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine rec...    30   1.2  
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    30   1.6  
AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    30   1.6  
AF016444-2|AAN73877.1|  320|Caenorhabditis elegans Serpentine re...    29   3.7  
Z35663-4|CAA84724.1|  307|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine r...    28   4.9  
Z69716-1|CAA93526.1|  486|Caenorhabditis elegans Hypothetical pr...    28   6.5  
U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine rec...    28   6.5  
AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna pol...    28   6.5  
AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine re...    28   6.5  
AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymeras...    28   6.5  
U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine rec...    27   8.6  

>L14429-8|AAA28214.1|   94|Caenorhabditis elegans Hypothetical
           protein ZK652.3 protein.
          Length = 94

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 114 SKVTFKITLTSDPKLPFKV 170
           SKVTFKITLTSDPKLPFKV
Sbjct: 12  SKVTFKITLTSDPKLPFKV 30


>AF303260-1|AAG50218.1|   94|Caenorhabditis elegans 3H949 protein.
          Length = 94

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 19/19 (100%), Positives = 19/19 (100%)
 Frame = +3

Query: 114 SKVTFKITLTSDPKLPFKV 170
           SKVTFKITLTSDPKLPFKV
Sbjct: 12  SKVTFKITLTSDPKLPFKV 30


>Z75710-9|CAB00024.2|  752|Caenorhabditis elegans Hypothetical
           protein D1081.3 protein.
          Length = 752

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 29/107 (27%), Positives = 49/107 (45%)
 Frame = +1

Query: 253 QDFVNLCQAENWPNNTTTDIELRNAFKIAQHIEKCLEKLQKRNLLNEFLSTLYNYDDKSC 432
           Q  V      N PN  T   + RN    + +IE  +++  K + +NE LS  Y  +D + 
Sbjct: 623 QQIVQNSSDPNSPNVNTNPSKNRNTTSNSNYIELPIDE-GKIDEVNEALS--YP-EDSND 678

Query: 433 YFLKNCFADSTKAVLKKIIVSDCSINQIDISLNIYIEIFDEDKLVEC 573
           YFLK+  A +T+  + K +       + D   ++  E  D+D   +C
Sbjct: 679 YFLKSMMAKNTERTVYKAMFDQFDSPEQDARGSVINEKEDDDDDEDC 725


>AF043700-6|AAB97569.2|  443|Caenorhabditis elegans Hypothetical
           protein K09H9.2 protein.
          Length = 443

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 526 LNIYIEIFDEDKLVECLSDIMLETASKRTLLDNLPAHIP 642
           L + +E+ DED     + D+ LE  S+ +L  NLP ++P
Sbjct: 257 LGLIVELLDEDS----IGDVKLEKISRASLRSNLPENVP 291


>AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical
           protein Y39C12A.7 protein.
          Length = 324

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +1

Query: 208 AKWKRLY*ESFSTFFQDFVNLCQAENWPNNTTTDIELRNAFKIAQHIEKC 357
           A  K ++  SF T +  F+ +C   ++ NNTT   E +   K+     KC
Sbjct: 226 ASEKNIFLLSFDTIYTIFILVCPYLHYKNNTTWQHEFKKCLKLYTSEVKC 275


>U80029-16|AAB37595.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 21 protein.
          Length = 330

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 427 IYHHNYTMLREIHLTGFFFEVFPNISLY 344
           ++H N T++ ++HL GFF   F  I L+
Sbjct: 53  LFHINVTIIFQVHLFGFFIHFFSRIILH 80


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1613

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +1

Query: 373  KRNLLNEFLSTLYNYDDKSCYFL--KNCFADSTKAVLKK 483
            KRN +  F   LYN    +CY L  K+C  + T AVL K
Sbjct: 1313 KRNQIRTFDDVLYNTPLTTCYSLIAKDCSEEPTFAVLSK 1351


>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
            protein Y46G5A.4 protein.
          Length = 2145

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 438  FKKLLCRLYKSCIKKNYSFRLLYQSNRH 521
            FKK+   + +S  KKNYSF  LY  ++H
Sbjct: 1125 FKKIPSEVVRSIDKKNYSFDRLYDLDQH 1152


>AF016444-2|AAN73877.1|  320|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 10 protein.
          Length = 320

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 427 IYHHNYTMLREIHLTGFFFEVFPNISLYVA 338
           ++H N  ++ ++HL GFF   F  I L+ +
Sbjct: 43  LFHINVIIIFQVHLAGFFIHCFNRIILHAS 72


>Z35663-4|CAA84724.1|  307|Caenorhabditis elegans Hypothetical
           protein T04A8.6 protein.
          Length = 307

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 292 NNTTTDIELRNAFKIAQHIEKCLEKLQKRNLLNEF 396
           NNTT   ++ NA K  Q++ K L+KLQ   +  +F
Sbjct: 141 NNTTGKNDVINAKKRVQNLNKTLKKLQNMGINYDF 175


>AF016444-13|AAB65926.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 8 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 427 IYHHNYTMLREIHLTGFFFEVFPNISLY 344
           ++H N  ++ +IHL GFF   F  I L+
Sbjct: 53  LFHINVIIIFQIHLFGFFIHFFSRIILH 80


>Z69716-1|CAA93526.1|  486|Caenorhabditis elegans Hypothetical
           protein C04B4.1 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 295 NTTTDIELRNAFKIAQHIEKCLEKLQKRNLLNEFLSTLYNYDDKSCYFLKNCFADSTKAV 474
           NTTT   + N+  ++Q +   L    K   L+     +   D+++C F  N F D++   
Sbjct: 43  NTTTSKVIPNSSYVSQALPFVLLSFGKVCWLSSQGGVIRTRDNRNCTFQLNDFCDNSVTD 102

Query: 475 LKKII 489
           L K++
Sbjct: 103 LTKVL 107


>U80029-17|AAB37596.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 22 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 427 IYHHNYTMLREIHLTGFFFEVFPNISLY 344
           ++H N  ++ ++HL GFF   F  I L+
Sbjct: 53  LFHINVIIIFQVHLFGFFIHFFSRIILH 80


>AF025460-5|AAB70988.5|  584|Caenorhabditis elegans Polh (dna
           polymerase eta) homologprotein 1 protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 206 LRNGRDCTERVFRLFFKISLISVRQKIGPTTQ 301
           + N R+CTE +  L   +++  +RQ+I   TQ
Sbjct: 177 IENARNCTENLLLLIAAVTVEQIRQQIHEETQ 208


>AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 9 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 427 IYHHNYTMLREIHLTGFFFEVFPNISLYVALF*MHFLV 314
           ++H N  ++ ++HL GFF      I L+V     +FL+
Sbjct: 53  LFHINVIIIFQVHLFGFFIHCLNRIILHVLDLYSYFLL 90


>AB244413-1|BAE72703.1|  584|Caenorhabditis elegans DNA polymerase
           eta protein.
          Length = 584

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 206 LRNGRDCTERVFRLFFKISLISVRQKIGPTTQ 301
           + N R+CTE +  L   +++  +RQ+I   TQ
Sbjct: 177 IENARNCTENLLLLIAAVTVEQIRQQIHEETQ 208


>U80029-18|AAB37597.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 20 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 427 IYHHNYTMLREIHLTGFFFEVFPNISLY 344
           ++H N  ++ ++HL GFF   F  I L+
Sbjct: 53  LFHINVIIIFQVHLFGFFVHFFSRIILH 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,443,495
Number of Sequences: 27780
Number of extensions: 268719
Number of successful extensions: 760
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)