Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15j08f
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    25   0.62 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.8  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    21   7.7  
AY078399-1|AAL83702.1|   31|Apis mellifera major royal jelly pro...    21   7.7  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.7  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 271 RD*RNLEKKSKNSLSTVSSISQRCNFNNN 185
           RD R  E+  +  +  +SS+S  CN++NN
Sbjct: 290 RDRRERERSKEPKI--ISSLSNSCNYSNN 316


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -3

Query: 202 CNFNNNP*IQHTLNGSFGSDVSVILKVTFDILNYTQIKKF 83
           CN   NP I  TLN  F      IL      LN+   ++F
Sbjct: 418 CNSLLNPIIYATLNRDFRKPFREILYFRCSNLNHMMREEF 457


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 262 RNLEKKSKNSLSTVSSISQRCNFNNN 185
           R+ E K  +SLS   + S   N+NNN
Sbjct: 75  RSKEPKIVSSLSNNYNYSNYNNYNNN 100


>AY078399-1|AAL83702.1|   31|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 31

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 322 FLVLCQLLCCWANFLPDRD*RNLEK 248
           F+V C  + C    + +   RNLEK
Sbjct: 6   FMVACLGIACQGAIVRENSPRNLEK 30


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 322 FLVLCQLLCCWANFLPDRD*RNLEK 248
           F+V C  + C    + +   RNLEK
Sbjct: 6   FMVACLGIACQGAIVRENSPRNLEK 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,347
Number of Sequences: 438
Number of extensions: 3175
Number of successful extensions: 19
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)