Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15j07r
         (350 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   1.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   2.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   3.2  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   4.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   4.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   5.6  
S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    20   9.8  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      20   9.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   9.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   9.8  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    20   9.8  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 191 RL*EQVLTLQPGWGFLPPLG*KSP 262
           R+    + LQPG  F  PLG + P
Sbjct: 458 RMDRDAVYLQPGMSFGEPLGLRRP 481


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 75  NAVFGKRGNGIYGLRTGSSWPF*KY 1
           N V  K+G G   LR    W F KY
Sbjct: 97  NVVTNKKGKGGPLLRPYPDWSFAKY 121


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = -3

Query: 75  NAVFGKRGNGIYGLRTGSSWPF*KY 1
           N V  K GNG   L+    W F KY
Sbjct: 96  NVVSDKTGNGGRLLQPYPDWSFAKY 120


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 202 AGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISS 327
           AGT+S T+          + + +A+    +T+VGV  + ++S
Sbjct: 788 AGTSSITKYTGCELTSESMPLQSALTAAVQTSVGVTEISLAS 829


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 202  AGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISS 327
            AGT+S T+          + + +A+    +T+VGV  + ++S
Sbjct: 878  AGTSSITKYTGCELTSESMPLQSALTAAVQTSVGVTEISLAS 919


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 256 LLPQRWQK 233
           +LP+RWQK
Sbjct: 324 MLPERWQK 331


>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 225 VGGFCH 242
           VGGFCH
Sbjct: 10  VGGFCH 15


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 62  PNTALPMLKVPPEH 103
           P+T L  L  PPEH
Sbjct: 51  PSTHLMDLSSPPEH 64


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 216  CNPVGGFCHRWGKSHHEQ 269
            CN VG     W K   EQ
Sbjct: 1335 CNAVGDPTREWYKGQGEQ 1352


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +3

Query: 216  CNPVGGFCHRWGKSHHEQ 269
            CN VG     W K   EQ
Sbjct: 1331 CNAVGDPTREWYKGQGEQ 1348


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 275 TALLMVTFTPTVAETPNRV 219
           T LLMV+ T  +AE  + V
Sbjct: 6   TLLLMVSITLVIAEESDNV 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,312
Number of Sequences: 438
Number of extensions: 2118
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)