Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15j07f
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       26   1.8  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    26   2.4  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    26   2.4  
SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces ...    25   3.2  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    25   3.2  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    25   4.3  
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    25   5.6  
SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    24   9.8  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    24   9.8  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    24   9.8  
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    24   9.8  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    24   9.8  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    24   9.8  

>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 142 VPALTVEPTNCTPPLFVTIVSLAD 213
           +PAL ++P+ CTP       SL D
Sbjct: 74  MPALRLKPSQCTPLFLAVYTSLRD 97


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 139 LVPALTVEPTNCTPPLFVTIVSLADYVTTSIRLRTIS 249
           L+P++T     C PP+FV IV ++  +  +  L  IS
Sbjct: 270 LLPSVTFWQNICYPPIFVKIVDVSLKILFNWDLSNIS 306


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 148 ALTVEPTNCTPPLFVTIVSLADYVTTSI 231
           AL+  PTNC   ++   VSL  Y+T+++
Sbjct: 678 ALSKFPTNCLRSVYSHTVSLMKYLTSAV 705


>SPAPYUG7.06 |mug67||PPPDE peptidase family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -2

Query: 191 TNSGGVQFVGSTVRAGTNSATRLGVSATVGVKVTMSNAVKNT 66
           TN+  ++  GS + +  N  +R+G++        + +  KNT
Sbjct: 109 TNAAAIELTGSPIPSFLNRISRIGLAFPTITNALLQHGQKNT 150


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
 Frame = +1

Query: 109 VAETPNRVAELVPALTVEPTNCTPPLFVTIVSLADYVTTSIRLRTISALEVPSTWVMPYL 288
           ++E  N V +L   + + PT C   L     + +     +++ R   +L   S WV   L
Sbjct: 222 LSEVDNLVKKLDTVIRLAPTGCLATLTSVHANASAQTVDALKHRYGFSLTTTSKWVGVTL 281

Query: 289 VSAETE-STDSELAAVGLSKNTISVNQIKQNST 384
            S+  E S   EL  +  S   ++ + +  N T
Sbjct: 282 ESSALEFSWPLELCFLETSALRMNDDSLSSNLT 314


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 178 PPLFVTIVSLADYVTTSIRLRTISALEVP 264
           P L  TI  L DY T  +R   I+  EVP
Sbjct: 692 PYLQTTIHHLEDYATVGLRTLCIAMREVP 720


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 146 GTNSATRLGVSATVGVKVTMSNA 78
           GTN  ++LG ++ VGV + ++ A
Sbjct: 100 GTNDKSKLGANSIVGVSMAVARA 122


>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 77  VKNTEKTTVGVDCLHISS 24
           +K  E T V V+CLH+ S
Sbjct: 755 LKEVEDTNVKVECLHVIS 772


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +1

Query: 178  PPLFVTIVSLADYVTTSIRLRTISALEVPSTWVMPYLVSAETES 309
            P L   I+   DY  T   +  +S L VPS +  P   + E+++
Sbjct: 913  PSLSKLIIIAEDYKCTEEIITIVSMLSVPSVFYRPKERAEESDA 956


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +1

Query: 112 AETPNRVAELVPALTVEPTNCTPPLFVTIVSLADYVTTSIRLRTI 246
           A  P+RV EL   +TV+P          IV L D  T SI  R +
Sbjct: 229 ATIPSRVEELAKVVTVDPIR-------IIVGLKDAATDSIDQRLL 266


>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 292 SAETESTDSELAAVGLSKNTISVNQIKQNSTXKKK 396
           S   + TD+ L  +    NT+SV  +  N    KK
Sbjct: 120 SESQKDTDASLTQMDQLSNTVSVKDLSINRNTNKK 154


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 281 GITHVEGTSRALIVLS 234
           GI HVEG+  ALI LS
Sbjct: 82  GIEHVEGSRYALIFLS 97


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 7   P*TVTQELMWRQSTPTVVFSVFLTALL 87
           P  V  +L W+QS   V+ ++F+T+++
Sbjct: 350 PDHVRVKLPWQQSANNVLITLFITSIM 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,517
Number of Sequences: 5004
Number of extensions: 30896
Number of successful extensions: 88
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)