Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15j07f
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 30 0.78
01_05_0711 - 24495399-24495595,24495733-24495826,24495906-244959... 30 0.78
10_08_0973 - 21963754-21963936,21964089-21964383,21964504-219646... 29 1.4
04_01_0230 - 2921845-2922690 29 1.4
12_02_0456 - 19222153-19222311,19223005-19223379,19223926-192240... 28 2.4
07_02_0011 + 11753791-11753923,11754178-11754269,11757396-117576... 28 2.4
01_01_0975 - 7686297-7686458,7687117-7687245,7687754-7687831,768... 28 3.1
10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507... 27 4.1
10_05_0001 + 7702156-7702565,7702858-7702972,7704085-7704351,770... 27 5.5
08_02_1406 - 26854845-26855606 27 5.5
05_04_0022 - 17217626-17217643,17217740-17217856,17217987-172181... 27 5.5
01_06_1477 + 37645143-37647425 27 5.5
07_03_1296 + 25583195-25584385 27 7.2
12_02_1076 - 25862671-25863159,25863290-25863451,25863614-258638... 26 9.6
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 26 9.6
02_04_0014 + 18916942-18917142,18917350-18917628,18917719-189181... 26 9.6
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 29.9 bits (64), Expect = 0.78
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 34 WRQSTPTVVF----SVFLTALLMVTFTPTVAETPNRVAELVPALTVEPTNCTPP 183
W S+P ++F + ++ L+ T +P+VA +PN P+L P TPP
Sbjct: 37 WSDSSPRLLFFSSTASSSSSPLLSTGSPSVAVSPNANLSFDPSLIPTPAASTPP 90
>01_05_0711 -
24495399-24495595,24495733-24495826,24495906-24495986,
24496130-24496178,24496281-24496366,24496452-24496679,
24496797-24496835,24496911-24497000,24497093-24497155,
24497233-24497302,24497400-24497446,24497544-24497606,
24497702-24497752,24497851-24497934,24498075-24498139,
24498243-24498299,24498409-24498526,24498624-24498674,
24499100-24499186,24499272-24499351,24500663-24500780
Length = 605
Score = 29.9 bits (64), Expect = 0.78
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 24 GAYVEAIHTDGGLLGIFDRIAHGDFYPNG 110
GAY +H +G + + +++G +YPNG
Sbjct: 572 GAYTSTVHQNGHAKKLANGLSNGTYYPNG 600
>10_08_0973 -
21963754-21963936,21964089-21964383,21964504-21964616,
21964729-21964913,21965054-21965201,21965297-21965575,
21965657-21965761,21965936-21966178,21966426-21966486,
21966734-21966792
Length = 556
Score = 29.1 bits (62), Expect = 1.4
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +3
Query: 111 GRNPQPGCRVSTCSHSRAYELYASTVRHNR 200
G++ +PGC ++TC+H RA L+ +V R
Sbjct: 264 GKDGRPGCVMNTCAH-RACPLHLGSVNEGR 292
>04_01_0230 - 2921845-2922690
Length = 281
Score = 29.1 bits (62), Expect = 1.4
Identities = 27/84 (32%), Positives = 37/84 (44%)
Frame = +1
Query: 70 FLTALLMVTFTPTVAETPNRVAELVPALTVEPTNCTPPLFVTIVSLADYVTTSIRLRTIS 249
FLT F + E EL P L V+PT PP+ + V TS L
Sbjct: 130 FLTPPYPPAFHALLGEASMLATELAPYL-VDPTAAQPPV-------PEMVHTS--LNPTP 179
Query: 250 ALEVPSTWVMPYLVSAETESTDSE 321
+ ++ S+ P V +ETE TD+E
Sbjct: 180 SPQLGSSLETPIQVDSETEGTDTE 203
>12_02_0456 -
19222153-19222311,19223005-19223379,19223926-19224047,
19224119-19224162,19224296-19224354,19224431-19224498,
19224707-19224851,19225243-19225440
Length = 389
Score = 28.3 bits (60), Expect = 2.4
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = -2
Query: 200 TIVTNSGGVQFVGSTVRAGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVGVDCLHISS 24
T+ T G FVG +V S+ ++ V A +G V SNA N EK + + CL+ +S
Sbjct: 88 TLATQYGWA-FVGLSVTEVMASSLKV-VIACLGSLVHSSNAADNQEKLSSAMFCLNSTS 144
>07_02_0011 +
11753791-11753923,11754178-11754269,11757396-11757689,
11757801-11758622
Length = 446
Score = 28.3 bits (60), Expect = 2.4
Identities = 27/84 (32%), Positives = 39/84 (46%)
Frame = +1
Query: 70 FLTALLMVTFTPTVAETPNRVAELVPALTVEPTNCTPPLFVTIVSLADYVTTSIRLRTIS 249
FLT F + E E P L V+PT PP+ + V TS+ + T+S
Sbjct: 295 FLTPPYPPAFHALLGEASMLATESAPYL-VDPTAAQPPV-------PELVHTSL-IPTLS 345
Query: 250 ALEVPSTWVMPYLVSAETESTDSE 321
++ S+ P V +ETE TD+E
Sbjct: 346 P-QLGSSLETPIQVDSETEGTDTE 368
>01_01_0975 -
7686297-7686458,7687117-7687245,7687754-7687831,
7688011-7688469,7690648-7690788,7691771-7692421
Length = 539
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/72 (29%), Positives = 28/72 (38%)
Frame = +1
Query: 76 TALLMVTFTPTVAETPNRVAELVPALTVEPTNCTPPLFVTIVSLADYVTTSIRLRTISAL 255
TA + PT+ P A +VP P C PPL V + T + T +A
Sbjct: 313 TAAVAPWVMPTIGFPPPHAAAMVPPPPHPPPFCRPPLHVW-----GHPTAGVEPTTAAAP 367
Query: 256 EVPSTWVMPYLV 291
PS P L+
Sbjct: 368 PPPSPHAQPPLL 379
>10_08_0971 -
21949721-21949936,21950051-21950484,21950599-21950791,
21950909-21951007,21951114-21951191,21951275-21951669,
21954317-21954482,21954840-21954927,21955015-21955127,
21955242-21955426,21955840-21955987,21956071-21956349,
21956425-21956529,21956892-21957137,21957367-21957408,
21957539-21957613
Length = 953
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 111 GRNPQPGCRVSTCSHSRAYELYASTVRHNR 200
G++ +PGC +TC+H RA L+ +V R
Sbjct: 264 GKDGRPGCVQNTCAH-RACPLHLGSVSEGR 292
>10_05_0001 +
7702156-7702565,7702858-7702972,7704085-7704351,
7704397-7704588
Length = 327
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -1
Query: 108 RWGKSHHEQCGQKYREDHRRCGLPP 34
RW +HH Q G + R G+PP
Sbjct: 299 RWRATHHIQWGDMSNQPPRSSGIPP 323
>08_02_1406 - 26854845-26855606
Length = 253
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -1
Query: 120 GFCHRW--GKSHHEQCGQKYREDHRRCG-LPP 34
GF H + KS H CG+ H RCG LPP
Sbjct: 99 GFSHVYTCSKSRHLACGRGGFRAHPRCGNLPP 130
>05_04_0022 -
17217626-17217643,17217740-17217856,17217987-17218112,
17218194-17218340,17218423-17218533,17218625-17218747,
17218827-17218958,17219157-17219252,17219532-17219653,
17219833-17220130,17220213-17220458,17220711-17220852,
17221068-17222105,17222183-17222262,17222558-17222800,
17222907-17222967,17224059-17224675
Length = 1238
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +1
Query: 151 LTVEPTNCTPPLFVTIVSLADYVTTSIRLRTISALEVPSTWV 276
L + PT+ + L +V+ DYVT ++ L IS+ + S V
Sbjct: 619 LPLTPTSASIALIEILVTAFDYVTNNVHLGAISSPHILSKLV 660
>01_06_1477 + 37645143-37647425
Length = 760
Score = 27.1 bits (57), Expect = 5.5
Identities = 18/60 (30%), Positives = 24/60 (40%)
Frame = +3
Query: 9 LNRNAGAYVEAIHTDGGLLGIFDRIAHGDFYPNGGRNPQPGCRVSTCSHSRAYELYASTV 188
L+ + G +HTD +G F + HG F N PG V A + A TV
Sbjct: 280 LSISLGLNNRPLHTDPVAIGSFAAMQHGIFVSTSAGNDGPGLSVLHNGAPWALTVAAGTV 339
>07_03_1296 + 25583195-25584385
Length = 396
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = -2
Query: 209 ANETIVTNSGGVQFVGSTVRAGTNSATRLGVSATVGVKVTMSNAVKNTEKTTVG 48
+ + + +N G V +T + A + G S+ VGV + K T + VG
Sbjct: 248 SKQNVESNGGNVNINVNTPPSNAQPANKSGASSGVGVGPSRGRIKKTTARKKVG 301
>12_02_1076 -
25862671-25863159,25863290-25863451,25863614-25863838,
25863939-25864037,25864584-25864992,25865094-25865221,
25865955-25866329
Length = 628
Score = 26.2 bits (55), Expect = 9.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 252 SGGTFNMGNAVFGKRGNGIYGLR 320
SGG + G FG+ G G YG R
Sbjct: 479 SGGFDSFGGGGFGREGGGSYGRR 501
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 26.2 bits (55), Expect = 9.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 129 GCRVSTCSHSRAYELYASTVRHNRF 203
G RV C H+ E ++ V HN++
Sbjct: 177 GTRVLDCGHTMHMECFSEMVEHNKY 201
>02_04_0014 +
18916942-18917142,18917350-18917628,18917719-18918114,
18924837-18925085
Length = 374
Score = 26.2 bits (55), Expect = 9.6
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +1
Query: 139 LVPALTVEPTNCTPPLFVTIVSLADYVTT-SIRLRTISALEVPSTWV-----MPYLVSAE 300
L + VE P +F+++ +LA + T +I LR + + + +P +SAE
Sbjct: 252 LEAVMDVEDIGQDPDMFLSLNALAGWGNTGTIHLRALVQNQEEEELMRLYQELPQRLSAE 311
Query: 301 TESTDSELAAVGLSKNTISVNQIK 372
D+ + + KNT ++++K
Sbjct: 312 EVEADTAVLTLAEDKNTTCLSRVK 335
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,616,158
Number of Sequences: 37544
Number of extensions: 256738
Number of successful extensions: 653
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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