Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15i24f
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    26   3.5  
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual     26   3.5  
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom...    26   3.5  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   6.1  
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei...    25   6.1  

>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 125 RELAVASSGSLVVEDIRLVSTVSLRLLPSI 214
           RELA+++ GS     I L S VSL L PS+
Sbjct: 352 RELAISTVGSSDSSGIFLASLVSLFLEPSL 381


>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1029

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 458 HKLSKFRRYTLRRLFTKY 405
           HK  K+  Y+L R+FT+Y
Sbjct: 254 HKCKKWAYYSLNRIFTRY 271


>SPCC1235.10c |sec6||exocyst complex subunit
           Sec6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 730

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 17/55 (30%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
 Frame = -3

Query: 385 NTLNDLPDLLVVSF-----EEFGKSVVQSVIQLFGYVVAEENNFESGLNIANSKN 236
           NTL+D  D LV++F     +      +++++Q+F  V AEE++ E   +I ++K+
Sbjct: 163 NTLSDNFDRLVLNFCRNIFQLVKSGHIKTIVQIFKIVEAEESSDEVLKSIRDAKS 217


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = -1

Query: 318 KASFSFSDTSLPKRTTLRADSTLPTVRT 235
           K   SFS TSLP  TT  A S L T  T
Sbjct: 341 KLDSSFSPTSLPTFTTNSASSGLSTSYT 368


>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
           Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 246 TVRTALSSLTLMLGSNRKLTVETRRISSTTRL 151
           T ++ + SL   +G+ RK+T+  RR+   TRL
Sbjct: 55  TKKSEIRSLFETVGTVRKVTIPFRRVRRGTRL 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,663,724
Number of Sequences: 5004
Number of extensions: 30100
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)