Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15i24f
         (486 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein prot...    31   1.6  
Y16270-1|CAA76151.1|  387|Homo sapiens paralemin protein.              29   8.7  
Y14770-1|CAB37400.1|  387|Homo sapiens paralemmin protein.             29   8.7  
D87460-1|BAA13400.1|  345|Homo sapiens KIAA0270 protein.               29   8.7  
BC032449-1|AAH32449.1|  387|Homo sapiens paralemmin protein.           29   8.7  
AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related ...    29   8.7  
AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.             29   8.7  

>AY312160-1|AAQ82434.1| 1569|Homo sapiens mucin glycoprotein protein.
          Length = 1569

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -1

Query: 294  TSLPKRTTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLPLLATANSLPKM 115
            + LP   TLR+ +T PTV  A +  T    S    +       +T  LP  AT+ + P +
Sbjct: 1283 SGLPPTATLRSTATKPTVTQATTRATASTASPATTSTAQSTTRTTMTLPTPATSGTSPTL 1342


>Y16270-1|CAA76151.1|  387|Homo sapiens paralemin protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -1

Query: 276 TTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLP 148
           T LR     P ++ A+ S+ + +  + K+T ETR +SSTT LP
Sbjct: 154 TPLRTVDGSPMMKAAMYSVEITVEKD-KVTGETRVLSSTTLLP 195


>Y14770-1|CAB37400.1|  387|Homo sapiens paralemmin protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -1

Query: 276 TTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLP 148
           T LR     P ++ A+ S+ + +  + K+T ETR +SSTT LP
Sbjct: 154 TPLRTVDGSPMMKAAMYSVEITVEKD-KVTGETRVLSSTTLLP 195


>D87460-1|BAA13400.1|  345|Homo sapiens KIAA0270 protein.
          Length = 345

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -1

Query: 276 TTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLP 148
           T LR     P ++ A+ S+ + +  + K+T ETR +SSTT LP
Sbjct: 112 TPLRTVDGSPMMKAAMYSVEITVEKD-KVTGETRVLSSTTLLP 153


>BC032449-1|AAH32449.1|  387|Homo sapiens paralemmin protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = -1

Query: 276 TTLRADSTLPTVRTALSSLTLMLGSNRKLTVETRRISSTTRLP 148
           T LR     P ++ A+ S+ + +  + K+T ETR +SSTT LP
Sbjct: 154 TPLRTVDGSPMMKAAMYSVEITVEKD-KVTGETRVLSSTTLLP 195


>AF414442-1|AAL65133.2|22152|Homo sapiens ovarian cancer related tumor
             marker CA125 protein.
          Length = 22152

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = -1

Query: 318   KASFSFSDTSLPKRTTLRADSTLP-TVRTALSSLTLMLGSNRKLTVETRRISSTTRLPLL 142
             K S S S  SLP  T+    STLP ++ ++  S+T +L      T +T     T+  P L
Sbjct: 10019 KTSSSSSLLSLPVTTSPSVSSTLPQSIPSSSFSVTSLLTPGMVKTTDTSTEPGTSLSPNL 10078

Query: 141   ATANSLPKMVA*PLTATAEALSLGRARSMLNV 46
              +  S+  + A  +T   E +    + ++ NV
Sbjct: 10079 -SGTSVEILAASEVTTDTEKIHPSSSMAVTNV 10109


>AF361486-1|AAK74120.3| 6995|Homo sapiens mucin 16 protein.
          Length = 6995

 Score = 29.1 bits (62), Expect = 8.7
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
 Frame = -1

Query: 318  KASFSFSDTSLPKRTTLRADSTLP-TVRTALSSLTLMLGSNRKLTVETRRISSTTRLPLL 142
            K S S S  SLP  T+    STLP ++ ++  S+T +L      T +T     T+  P L
Sbjct: 1723 KTSSSSSLLSLPVTTSPSVSSTLPQSIPSSSFSVTSLLTPGMVKTTDTSTEPGTSLSPNL 1782

Query: 141  ATANSLPKMVA*PLTATAEALSLGRARSMLNV 46
             +  S+  + A  +T   E +    + ++ NV
Sbjct: 1783 -SGTSVEILAASEVTTDTEKIHPSSSMAVTNV 1813


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,263,191
Number of Sequences: 237096
Number of extensions: 1040667
Number of successful extensions: 2608
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2608
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4384610846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)