Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15i23f
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 29 0.64
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 29 0.64
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 28 0.84
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 27 1.5
SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces po... 26 4.5
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 6.0
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 6.0
SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.0
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 7.9
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 25 7.9
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa... 25 7.9
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 28.7 bits (61), Expect = 0.64
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 360 HSAYTRKIRPHPNRFSFGSTLNNTPPPPHQCSATR 464
H+ + PHP FS S + T PPP S +R
Sbjct: 346 HTQNSSAQSPHPRVFSANSAFSTTSPPPLTPSTSR 380
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 28.7 bits (61), Expect = 0.64
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 427 LFSVEPNENRFGCGRIFRVYAECQ 356
L + EP + FGCG +F + ECQ
Sbjct: 165 LATTEPYSSDFGCGSLFYMSPECQ 188
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 28.3 bits (60), Expect = 0.84
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 107 VSFTSAQDSLQVNTTEGTVEGSRAADGDYLTFYDIPYA 220
VSF S T G + SR D + + FYD+ A
Sbjct: 106 VSFNRLPKSASTKTKNGRIRSSRREDDNRIPFYDLDVA 143
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 27.5 bits (58), Expect = 1.5
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 128 DSLQVNTTEGTVEGSRAADGDYLT 199
D+ QVN G V SRA D DY T
Sbjct: 79 DTKQVNGAGGQVNHSRAEDSDYAT 102
>SPAC3G9.08 |png1||ING family homolog Png1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 25.8 bits (54), Expect = 4.5
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 227 TSGENRFKAPSPPTNYSGVYHAVNRNILCAQPNTRGLIGVENCLTLSIYTK-NTTTP 394
T+G R A + +GVYH+ L +TRG T + TK ++TTP
Sbjct: 158 TAGRRRTSATTRGAIQNGVYHSPYTASLADSGSTRGQKVSNATATTQLETKADSTTP 214
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +3
Query: 387 PHPNRFSFGSTLNNTPPPPHQCSAT 461
P FSFG NN P P +AT
Sbjct: 459 PASGGFSFGQNANNAPKPAFGSTAT 483
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 269 NYSGVYHAVNRNILCAQPNTRGLIGVENCLTLSIYTKNTTTPKPVFV 409
NYSG + ILC L G E+C T+ KN + P+ +
Sbjct: 238 NYSGWTNMGWSFILCFTTPVWVLSGFESCATIVEEAKNASKAAPIAI 284
>SPBC8E4.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 129
Score = 25.4 bits (53), Expect = 6.0
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 356 LTLSIYTKNTTTPKPVFVWLNAEQYASTTTPVFS 457
L++ + N++T KP F W N+ Y +F+
Sbjct: 82 LSMELKKPNSSTIKPCFTWANSVLYNDILIFIFA 115
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 461 CS*TLVWWWRRIVQR*AKRKPVWVWSYFSCIC*VSDSSL 345
CS WWWR + V+++S F +S SSL
Sbjct: 548 CSENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISSSSL 586
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 25.0 bits (52), Expect = 7.9
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 510 RRKFRGTKTMFSSTIF-L*LNTGVVVEAYCSALSQ-TKTGLGVVVFFVYMLSVRQFSTPI 337
R FRGTK F +TIF + +VE + S+ T L +FF+ + S+ +
Sbjct: 233 RGYFRGTKNSFKATIFEKNEDPDYIVEGVWTGESKLTIPSLKSTIFFLSIPSLEATPITV 292
Query: 336 RP 331
+P
Sbjct: 293 KP 294
>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 509
Score = 25.0 bits (52), Expect = 7.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 253 SLESVLSRCWTGVWYIV 203
SLE L RCW G+ +++
Sbjct: 213 SLEPALGRCWRGLLWLI 229
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,424
Number of Sequences: 5004
Number of extensions: 55442
Number of successful extensions: 163
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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