Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15i16f
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas... 367 e-103
SPCC31H12.05c |sds21||serine/threonine protein phosphatase Sds21... 345 3e-96
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 285 3e-78
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 196 2e-51
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 192 2e-50
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 184 1e-47
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 176 2e-45
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc... 176 2e-45
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc... 175 5e-45
SPBC3F6.01c |||serine/threonine protein phosphatase |Schizosacch... 132 5e-32
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 29 0.38
SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces po... 28 1.2
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 26 3.5
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch... 26 3.5
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 26 3.5
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 26 4.7
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 6.2
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 25 6.2
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 25 8.2
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 8.2
>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
PP1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 327
Score = 367 bits (902), Expect = e-103
Identities = 165/191 (86%), Positives = 178/191 (93%)
Frame = +3
Query: 15 ELNVDSLIHRLLEVRGCRPGKTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDI 194
++++DS+I RLLEVRG RPG+ VQ+SE E+R LC K+REIF+ QPILLELEAPLKICGDI
Sbjct: 5 DVDLDSIIDRLLEVRGSRPGRQVQLSEDEIRFLCNKAREIFISQPILLELEAPLKICGDI 64
Query: 195 HGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNH 374
HGQY DLLRLFEYGGFPPEANYLFLGDYVDRGKQSLE ICLLLAYKIKYPENFF+LRGNH
Sbjct: 65 HGQYYDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLEVICLLLAYKIKYPENFFILRGNH 124
Query: 375 ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQ 554
ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIF HGGLSPDL M+Q
Sbjct: 125 ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFTMHGGLSPDLNSMDQ 184
Query: 555 IRRIMRPTDVP 587
I+RIMRPTDVP
Sbjct: 185 IQRIMRPTDVP 195
>SPCC31H12.05c |sds21||serine/threonine protein phosphatase
Sds21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 345 bits (848), Expect = 3e-96
Identities = 149/191 (78%), Positives = 174/191 (91%)
Frame = +3
Query: 15 ELNVDSLIHRLLEVRGCRPGKTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDI 194
+ ++D++I +L++ R +P K VQ+S+AE+R LCT SR IFL QP+LLELEAPLKICGDI
Sbjct: 2 DYDIDAIIEKLVKARNGKPSKQVQLSDAEIRYLCTTSRSIFLSQPMLLELEAPLKICGDI 61
Query: 195 HGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNH 374
HGQY+DLLRLFEYGG+PP+ANYLFLGDYVDRGKQSLE ICLL AYKIKYPENFFLLRGNH
Sbjct: 62 HGQYSDLLRLFEYGGYPPDANYLFLGDYVDRGKQSLEVICLLFAYKIKYPENFFLLRGNH 121
Query: 375 ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQ 554
E ASINRIYGFYDECKRRY+IKLWKTFTDCFNC+P+AA+IDEKIFC HGGLSPDL ++Q
Sbjct: 122 EFASINRIYGFYDECKRRYSIKLWKTFTDCFNCMPVAAVIDEKIFCMHGGLSPDLNSLDQ 181
Query: 555 IRRIMRPTDVP 587
I+RI+RPTD+P
Sbjct: 182 IQRIIRPTDIP 192
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 285 bits (699), Expect = 3e-78
Identities = 130/191 (68%), Positives = 150/191 (78%), Gaps = 1/191 (0%)
Frame = +3
Query: 18 LNVDSLIHRLLEVRGCRPG-KTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDI 194
LNVD +I RL+ V R K+V + AE+ +C REIFL QP LLEL P+KI GD+
Sbjct: 190 LNVDEMIQRLIHVGYSRKSSKSVCLKNAEITSICMAVREIFLSQPTLLELTPPVKIVGDV 249
Query: 195 HGQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNH 374
HGQY+DL+RLFE GFPP +NYLFLGDYVDRGKQSLETI LL YKI+YPENFFLLRGNH
Sbjct: 250 HGQYSDLIRLFEMCGFPPSSNYLFLGDYVDRGKQSLETILLLFLYKIRYPENFFLLRGNH 309
Query: 375 ECASINRIYGFYDECKRRYNIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQ 554
ECA+I R+YGFYDECKRR NIK+WKTF + FNCLPIA+++ KIFC HGGLSP L M+
Sbjct: 310 ECANITRVYGFYDECKRRCNIKIWKTFINTFNCLPIASVVAGKIFCVHGGLSPSLSHMDD 369
Query: 555 IRRIMRPTDVP 587
IR I RPTDVP
Sbjct: 370 IREIPRPTDVP 380
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 196 bits (478), Expect = 2e-51
Identities = 83/172 (48%), Positives = 121/172 (70%), Gaps = 1/172 (0%)
Frame = +3
Query: 75 KTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEA 254
K +SEA+V LC K+RE+ Q+ + + P+ +CGDIHGQ+ DL+ LF+ GG P+
Sbjct: 32 KCEPLSEADVEMLCDKAREVLCQENNVQPVRNPVTVCGDIHGQFHDLMELFKIGGDVPDM 91
Query: 255 NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY- 431
NYLF+GDYVDRG S+ET+ LL+A K++YP +LRGNHE I ++YGFYDEC R+Y
Sbjct: 92 NYLFMGDYVDRGYHSVETVSLLVAMKLRYPNRITILRGNHESRQITQVYGFYDECLRKYG 151
Query: 432 NIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQIRRIMRPTDVP 587
+ +WK FT+ F+ P+ A+I+++IFC HGGLSP + ++ +R + R +VP
Sbjct: 152 SANVWKHFTNLFDYFPLTALIEDRIFCLHGGLSPSIDSLDHVRTLDRVQEVP 203
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 192 bits (469), Expect = 2e-50
Identities = 80/168 (47%), Positives = 119/168 (70%), Gaps = 1/168 (0%)
Frame = +3
Query: 87 MSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLF 266
+SE +V +C ++E+ + + + P+ +CGDIHGQ+ DL+ LF GG P+ NYLF
Sbjct: 23 LSEEDVIQMCDLAKEVLSVESNVQSVRCPVTVCGDIHGQFHDLMELFNIGGPSPDTNYLF 82
Query: 267 LGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKL 443
+GDYVDRG S+ET+ LL+A+KI+YP+ +LRGNHE I ++YGFYDEC R+Y N +
Sbjct: 83 MGDYVDRGYHSVETVSLLIAFKIRYPQRITILRGNHESRQITQVYGFYDECLRKYGNANV 142
Query: 444 WKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQIRRIMRPTDVP 587
W+ FTD F+ LP+ A+I+++IFC HGGLSP + ++ +R + R +VP
Sbjct: 143 WQYFTDLFDYLPLTALIEDRIFCLHGGLSPSIDTLDHVRILDRVQEVP 190
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 184 bits (447), Expect = 1e-47
Identities = 87/191 (45%), Positives = 126/191 (65%), Gaps = 1/191 (0%)
Frame = +3
Query: 18 LNVDSLIHRLLEVRGCRPGKTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDIH 197
+++D++I RL E + ++E+ + LC+ ++E+ +Q+ ++ L P+ + GDIH
Sbjct: 2 IDLDNIIERLYEKQ--------LIAESVIAYLCSLAKEVLMQESNVVRLSTPITVVGDIH 53
Query: 198 GQYTDLLRLFEYGGFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 377
GQ+ DLL +F GG P NYLFLGDYVDRG S+ETI LL+ K++YP+ LLRGNHE
Sbjct: 54 GQFDDLLEIFRIGGPCPYTNYLFLGDYVDRGYYSIETITLLICLKLRYPKRITLLRGNHE 113
Query: 378 CASINRIYGFYDECKRRY-NIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQ 554
I + YGFY EC R+Y N +WK FTD F+ L ++A ID+ IFC HGGLSP +Q ++Q
Sbjct: 114 SRGITQTYGFYSECLRKYGNANVWKYFTDIFDFLTLSATIDDTIFCVHGGLSPSIQHIDQ 173
Query: 555 IRRIMRPTDVP 587
I + R + P
Sbjct: 174 ILVLDRFREFP 184
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 176 bits (429), Expect = 2e-45
Identities = 77/172 (44%), Positives = 112/172 (65%), Gaps = 1/172 (0%)
Frame = +3
Query: 75 KTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEA 254
K + E +++ LC + I +++ + + P+ +CGDIHGQ+ DLL LF GG P
Sbjct: 13 KCKYLPEHQLKRLCEMVKVILMEESNIQPVRTPVTVCGDIHGQFYDLLELFRVGGELPST 72
Query: 255 NYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY- 431
NY+F+GD+VDRG SLET L + K +YP+ LLRGNHE I ++YGFYDEC+ +Y
Sbjct: 73 NYIFMGDFVDRGYFSLETFTLFMLLKARYPDKITLLRGNHESRQITQVYGFYDECQTKYG 132
Query: 432 NIKLWKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQIRRIMRPTDVP 587
N +WK F+ L +AA+ID KI C HGGLSP+++ ++QIR + R ++P
Sbjct: 133 NANVWKYCCQVFDFLTLAAVIDNKILCVHGGLSPEVRTLDQIRILARAQEIP 184
>SPBC26H8.05c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 176 bits (428), Expect = 2e-45
Identities = 79/166 (47%), Positives = 110/166 (66%), Gaps = 1/166 (0%)
Frame = +3
Query: 93 EAEVRGLCTKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYLFLG 272
E+ V LC + R+I +++ + + +P+ ICGDIHGQ DLL LF GG P YLFLG
Sbjct: 21 ESNVVELCQRVRDILIEESNIQWISSPVTICGDIHGQLHDLLELFRIGGSCPGTKYLFLG 80
Query: 273 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRY-NIKLWK 449
D+VDRG S+ET LLL K KYP+ L+RGNHE I ++YGFYDEC R+Y + +W+
Sbjct: 81 DFVDRGFYSVETFLLLLTLKCKYPKEMTLIRGNHESRQITQVYGFYDECVRKYGSANVWR 140
Query: 450 TFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQIRRIMRPTDVP 587
+ F+ L + A++D K+FC HGGLSP + ++QIR + R +VP
Sbjct: 141 YCCEIFDYLSLGALVDGKVFCVHGGLSPSISSIDQIRLLDRKQEVP 186
>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 554
Score = 175 bits (425), Expect = 5e-45
Identities = 80/168 (47%), Positives = 111/168 (66%)
Frame = +3
Query: 84 QMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRLFEYGGFPPEANYL 263
++SE + + K+ EI + L+E++AP+ +CGDIHGQY DL++LFE GG P YL
Sbjct: 84 RLSEEQTLYIIKKATEILKSEDNLIEVDAPVTVCGDIHGQYYDLMKLFEVGGNPANTQYL 143
Query: 264 FLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKL 443
FLGDYVDRG S+E + L A KI YP+ +LLRGNHECA + + F EC +YNIK+
Sbjct: 144 FLGDYVDRGYFSIECLLYLWALKIWYPKTLWLLRGNHECAHLTDYFTFKLECTHKYNIKV 203
Query: 444 WKTFTDCFNCLPIAAIIDEKIFCCHGGLSPDLQGMEQIRRIMRPTDVP 587
++ FN LP+AAI++++ C HGGLSP+L + IR I R + P
Sbjct: 204 YEACLQSFNALPLAAIMNKQFLCVHGGLSPELHTLNDIRMINRFCEPP 251
>SPBC3F6.01c |||serine/threonine protein phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 132 bits (318), Expect = 5e-32
Identities = 65/155 (41%), Positives = 95/155 (61%), Gaps = 6/155 (3%)
Frame = +3
Query: 126 REIFLQQPILLEL----EAPLKICGDIHGQYTDLLRLFEYGGFPPEAN-YLFLGDYVDRG 290
+E+ + P L+++ + L ICGD HGQY DLL +F+ G P N YLF GD+VDRG
Sbjct: 192 KELLEKTPSLIDIPVKGDETLVICGDTHGQYFDLLNIFKLHGPPSPTNKYLFNGDFVDRG 251
Query: 291 KQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRYNIKLWKTFTDCFN 470
S E L AYK+ YP+ F+ RGNHE +N++YGF EC+ +YN + + F++ F+
Sbjct: 252 SWSTEVAFTLYAYKLLYPDAVFINRGNHETDDMNKVYGFEGECRSKYNERTFNIFSETFS 311
Query: 471 CLPIAAIIDEKIFCCHGGL-SPDLQGMEQIRRIMR 572
LP+ ++I + HGGL S D ++Q+R I R
Sbjct: 312 LLPLGSLISDSYLVVHGGLFSDDNVTLDQLRNIDR 346
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 29.5 bits (63), Expect = 0.38
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 459 DCFNCLPIAAIIDEKIFCC-HGGLSPD 536
D ++C+ I A+ ++FCC HGGL+PD
Sbjct: 646 DPYSCVRILAL---ELFCCSHGGLTPD 669
>SPCC1235.03 |||SMR and CUE domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 399
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -3
Query: 303 PVTVYHDLHSHQGISNWLLAEILHIQRDVANLCTD 199
P+T+ + +H HQ +SN E++ Q + L D
Sbjct: 129 PITIRNLIHRHQPLSNITNNELMKYQEEATQLAKD 163
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +3
Query: 336 KYPENFFLLRGNHECASINRI--YGFYD-ECKRRYNIKLWKTFTDCFNCLP 479
+Y + + LL+ + + I + + F D K Y +K W+ F CLP
Sbjct: 144 EYADKYRLLKNHKNVSGIVKATHFAFADIPEKSEYTLKQWRIFEKAAGCLP 194
>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
3|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 237 GFPPEANYLFLGDYVDRGKQSLETICLLLAYKIKY 341
GF + + L LG Y RGKQS + L ++ Y
Sbjct: 482 GFGEDLDCLILGGYFGRGKQSGKINSFLCGLRMDY 516
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 3.5
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = +3
Query: 99 EVRGLCTKSREIFLQQPILLELEAPLKICGDIHGQYTDLLRL------FEYGGFPPEANY 260
+V+ ++ +FL P + +LE L+ G + L RL EY P +
Sbjct: 123 QVKASPIDAQYVFLAPPSIEQLEVRLRGRGT-ENESAILQRLERARAEIEYSEKPGNFDA 181
Query: 261 LFLGDYVDRGKQSLETICL 317
L + D V++ + LE ICL
Sbjct: 182 LIVNDDVEKAYKQLEAICL 200
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 25.8 bits (54), Expect = 4.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -2
Query: 196 CISPQILSGASNSSNMGCCRNISLDFVQSPRTSASDICTVLPG 68
C + + S NSS+ C R+ L F S R IC PG
Sbjct: 218 CKTTPLQSREKNSSSFVCTRSSGLTFYDSKR---EKICFTFPG 257
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -1
Query: 497 INYSSNWQAVKAIRESLPQFYIVSAFALVIKTINAVYA 384
+NYS NW VK I E A + K+I AVY+
Sbjct: 1344 VNYSKNWWNVK-ILEHFDFILDTEAASTFPKSITAVYS 1380
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 6.2
Identities = 7/19 (36%), Positives = 16/19 (84%)
Frame = -1
Query: 497 INYSSNWQAVKAIRESLPQ 441
I+YS++W A++ ++ ++PQ
Sbjct: 123 ISYSAHWLAIEGVQPAIPQ 141
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 333 FCKPIGDR*SPVTVYHDLHSHQGISNW 253
F P GD + + VYH S +G ++W
Sbjct: 554 FTHPDGDHLTLLNVYHAYKSGEGTADW 580
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 54 VRGCRPGKTVQMSEAEVRGLCTKSREIFLQQPILLELEAPLKICGD 191
V G + V +S + + K R++ +Q P+ +E L IC D
Sbjct: 165 VEGLKRTMNVDISVSYLEIYNEKIRDLLVQDPLSMEKPKSLNICED 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,244
Number of Sequences: 5004
Number of extensions: 59040
Number of successful extensions: 161
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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