Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15i09r
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    24   2.2  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          23   5.1  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   6.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   8.9  

>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 185 NLNNFIYYANNDVNVHERFKLYNNPIECERDKTSPIP 295
           N NN+  Y NN+ N + +   Y N I        P+P
Sbjct: 326 NYNNYNNYNNNNYNNYNKKLYYKNYIINIEQIPVPVP 362


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 225 MFTSALSYITIPLSVKETKHRLFQRKTSNAKI*KKM*QTLIISSF 359
           +FT   SY  I L++K+ + R        AKI K +   L+I++F
Sbjct: 78  VFTIVSSYAAIVLTLKKVRKRAGASGRREAKITKMV--ALMITAF 120


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 179 IRNLNNFIYYANNDVNVHERFKLYNN 256
           I +L+N   Y+NN  N +   KLY N
Sbjct: 304 ISSLSNSCNYSNNYYNNNNYKKLYYN 329


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 191 NNFIYYANNDVNVHERFKLYNN 256
           N  I Y NND++++E  +   N
Sbjct: 426 NTIIDYRNNDLSINEEKRTIEN 447


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +3

Query: 363 VINTISVNYLFIEDNCILSCIVES 434
           VI+ ++++++ +ED    SC+ E+
Sbjct: 480 VISHVNISHVMVEDGGEYSCMAEN 503


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +3

Query: 363 VINTISVNYLFIEDNCILSCIVES 434
           VI+ ++++++ +ED    SC+ E+
Sbjct: 480 VISHVNISHVMVEDGGEYSCMAEN 503


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 179 IRNLNNFIYYANNDVNVHERFKLYNN 256
           I +L+N   + NN+ N +   KLY N
Sbjct: 304 ISSLSNKTIHNNNNYNNYNNKKLYYN 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,604
Number of Sequences: 438
Number of extensions: 4730
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)