Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15i09f
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0487 - 21352955-21353080,21353164-21353357,21353815-213539...    28   5.2  
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078     27   9.2  
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744...    27   9.2  

>06_03_0487 -
           21352955-21353080,21353164-21353357,21353815-21353973,
           21354117-21354242,21354502-21354704,21354892-21355019,
           21355323-21355565,21356734-21356928
          Length = 457

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 179 DIQNFGIAQIQSWLRTYVRWRRSPVSRIRPSMC*VS*Y*VFTDSGNSLRSRASGK 343
           D+  FG A ++ WLR   RWR S  +R++ +    S   +F+  G     R  GK
Sbjct: 15  DLVGFGAAVLR-WLRRPRRWRGSGAARVKEAEVDWS---LFSSLGGECGERGGGK 65


>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
          Length = 574

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 479 VAREPNQKNPRSVLVEYVLKRAESTF*KPDGYPTWN-KKSRAART-SFYR*PGYV 321
           V+R+P +  P   +V Y     +     P   P WN   SR A++ SF   PG+V
Sbjct: 305 VSRDPTKTAPGRAVVRYASAAVDHPRTPPPTGPRWNDTASRVAQSRSFAALPGHV 359


>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
            32574554-32574887,32574915-32575037,32575193-32575394,
            32575915-32576097,32576332-32576436,32576553-32576760,
            32577025-32577170,32577321-32577443,32577490-32577698,
            32577931-32578152,32578189-32578198,32578710-32578763,
            32580841-32581052,32581620-32581772,32582071-32582158,
            32582192-32582290,32582660-32582907,32584806-32585049
          Length = 1260

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 330  GLAVKRRP-RRTRLLVPCWVTVRFLKGAFGAFENVFNEHGAWIFLIRFAGH-GTDL 491
            G  + RRP  R  LL     T+     A+G + ++F +H    F +R AG+ G DL
Sbjct: 1095 GDCLDRRPCLRYFLLATFLATLLLSLMAYGQWNSMFRDHDLDAFSVRLAGYEGIDL 1150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,420,940
Number of Sequences: 37544
Number of extensions: 319506
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)