Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15i01f
(607 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0471 + 34169562-34169892,34170121-34170347 37 0.014
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008 34 0.076
04_04_0924 - 29449285-29449290,29449386-29449575,29449669-294497... 34 0.10
10_08_0681 + 19855134-19855454 33 0.13
02_04_0382 - 22501041-22501279,22501717-22501810 30 1.2
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 30 1.6
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 29 2.2
04_03_0904 + 20717005-20718087 27 8.7
03_05_0937 - 28967038-28967245,28967348-28967556,28967584-289676... 27 8.7
>03_06_0471 + 34169562-34169892,34170121-34170347
Length = 185
Score = 36.7 bits (81), Expect = 0.014
Identities = 31/98 (31%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Frame = +2
Query: 326 SNPDPGFSRPV-IGQPGYVPISTG----PAYVXXXXXXXXXXXXGYEPIDNRPYIVNPPK 490
SN D GF G PG P+ G P Y P P PP
Sbjct: 11 SNADKGFHGAYPSGYPGAYPLMQGYPNSPGQYPTPGGYPSAPPGQYPPAGGYPGAQYPPS 70
Query: 491 DYNPNGNGYEPIDNGAYYVDPPQG---RPYFKPTPFPG 595
Y P+ GY P GAY PP G +P + P +PG
Sbjct: 71 GYPPSQGGYPP---GAY---PPSGYPQQPGYPPAGYPG 102
>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
Length = 580
Score = 34.3 bits (75), Expect = 0.076
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +2
Query: 446 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDPPQGRPYFKPTPFPGARG 604
Y P + P V PP Y P +G P N + Y +PP GRP P P GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448
>04_04_0924 -
29449285-29449290,29449386-29449575,29449669-29449772,
29449845-29449976,29450064-29450162,29450439-29450451,
29450688-29450719,29450802-29450921,29450992-29451105,
29451192-29451325,29454014-29454251
Length = 393
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 164 ALLAMANAQDPVKVVENADSVRDAKKRYGVNV-VDNNNPGHVNVVDNNHPGHVLISNPD 337
AL+ + A+ V V + D V +KR VN+ ++N+ ++ +NH G V +SN D
Sbjct: 60 ALVVLKEARAAVAVERDEDEVMGHRKRSKVNISSESNSDNDCSLSSDNHDGDVHLSNHD 118
>10_08_0681 + 19855134-19855454
Length = 106
Score = 33.5 bits (73), Expect = 0.13
Identities = 23/80 (28%), Positives = 38/80 (47%)
Frame = +2
Query: 104 IPFLINHCVDKPDFL*IFVLALLAMANAQDPVKVVENADSVRDAKKRYGVNVVDNNNPGH 283
+ L+ V+K + + + A LA A + + VVE +++ R G + NP H
Sbjct: 25 VALLLVGSVEKEEEVVVVRGARLAAARPCEEIYVVEEGETLHSISDRCGDPYILEQNP-H 83
Query: 284 VNVVDNNHPGHVLISNPDPG 343
V+ D+ PG V+ P PG
Sbjct: 84 VHDPDDVFPGLVIKITPRPG 103
>02_04_0382 - 22501041-22501279,22501717-22501810
Length = 110
Score = 30.3 bits (65), Expect = 1.2
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +2
Query: 491 DYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFPGARGG 607
D P+ + Y+P + YY DPP Y+ P P P GG
Sbjct: 55 DPPPSPDYYDPPHSPDYY-DPPPSPDYYDPPPSPYYGGG 92
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +2
Query: 464 RPYIVNP---PKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKP 580
+PY P P P G Y P G Y PP+G+P + P
Sbjct: 266 QPYPPKPQGQPYPPQPQGQPYPPQPYGQTYPPPPKGQPTYPP 307
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/47 (38%), Positives = 21/47 (44%)
Frame = +2
Query: 452 PIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 592
P + P IV P Y P+ YEP Y +PP PY P FP
Sbjct: 636 PYPSPPDIVPSPPSYEPSPPSYEP-SPPEYAPEPPVYAPY-PPGIFP 680
>04_03_0904 + 20717005-20718087
Length = 360
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +2
Query: 479 NPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTPFP 592
NPP Y P Y+P PP +P KPTP P
Sbjct: 237 NPPPTYKPAPPTYKPQPKPN---PPPTYKPQPKPTPTP 271
>03_05_0937 -
28967038-28967245,28967348-28967556,28967584-28967644,
28967926-28968742,28968960-28971024
Length = 1119
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Frame = +1
Query: 532 RCILRGPSPR-PTLLQAYPFPWCSRW 606
+ I+ PSP P + A F WCS W
Sbjct: 755 KAIIHNPSPLIPPIFGADEFGWCSEW 780
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,854,041
Number of Sequences: 37544
Number of extensions: 351358
Number of successful extensions: 894
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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