Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15i01f
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    35   0.052
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    33   0.21 
AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical...    29   2.6  
Z81130-2|CAB03417.1|  463|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U20535-1|AAC46632.1|  463|Caenorhabditis elegans gld-1 protein.        29   3.4  
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    28   4.5  
AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical...    28   4.5  
U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical p...    27   7.9  
Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical pr...    27   7.9  
Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
           protein T19D12.1 protein.
          Length = 1844

 Score = 34.7 bits (76), Expect = 0.052
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 414 PTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKA 563
           PTT P    TA  + TT   +   P +TT   T   ++TT  +T T+ +A
Sbjct: 209 PTTQPLVTSTAPEVTTTVAQTTTAPIVTTANTTTQGVTTTAGVTTTVTRA 258


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 32.7 bits (71), Expect = 0.21
 Identities = 22/59 (37%), Positives = 27/59 (45%)
 Frame = +3

Query: 402 T*TGPTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLPKADLTSS 578
           T T PTT P    T T   TTA+T+    K TT     T  ++T   T T PK    +S
Sbjct: 272 TTTTPTTTPTTTTTPTTTTTTAKTT----KSTTTTTKTTKTTSTPTTTTTTPKTPFDTS 326


>AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5C.21 protein.
          Length = 355

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 26  LCCVSLQML-IYIFNIK*PEIALRESKIPFLINH 124
           L  + LQ+L +Y+   K P IA++ SKIP LINH
Sbjct: 38  LVALPLQILALYVIIYKTP-IAMKISKIPLLINH 70


>Z81130-2|CAB03417.1|  463|Caenorhabditis elegans Hypothetical
           protein T23G11.3 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 363 PITGREKPGSGFEMRT*PGWLLSTTLTCPGLLLSTTF 253
           P+     PGSG    T  G +LS TLT   LL S  F
Sbjct: 355 PVLMSPTPGSGLPSTTFGGSILSPTLTASNLLGSNVF 391


>U20535-1|AAC46632.1|  463|Caenorhabditis elegans gld-1 protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 363 PITGREKPGSGFEMRT*PGWLLSTTLTCPGLLLSTTF 253
           P+     PGSG    T  G +LS TLT   LL S  F
Sbjct: 355 PVLMSPTPGSGLPSTTFGGSILSPTLTASNLLGSNVF 391


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
 Frame = +3

Query: 408 TGPTTDPKGQETATNLLTTARTSLILPKITTLME------TATNLSTTVHITWTLPKADL 569
           T PT DP    T T   TT   +    ++TT  E      T T  STT   T T P    
Sbjct: 26  TSPTADPT--TTTTEATTTTEITTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTT 83

Query: 570 TSS 578
           T++
Sbjct: 84  TTT 86


>AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical
           protein Y39A1A.16 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/77 (20%), Positives = 35/77 (45%)
 Frame = +2

Query: 89  LRESKIPFLINHCVDKPDFL*IFVLALLAMANAQDPVKVVENADSVRDAKKRYGVNVVDN 268
           +R  K+PF       K +   I  L L+A+ N  + + + ++   +    K+  +N+ + 
Sbjct: 1   MRIFKLPFTFFRVKFKKNSFKILNLPLVALTNVINQLDI-QSVSKLSKTSKKMRINIKNA 59

Query: 269 NNPGHVNVVDNNHPGHV 319
               H  ++DN+   H+
Sbjct: 60  RRKVHKLIIDNHFEYHI 76


>U40029-3|AAA81124.1|  269|Caenorhabditis elegans Hypothetical
           protein F10G7.6 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 449 EPIDNRPYI-VNPPKDYNPNGNGYEPIDNG 535
           EP D  P + V PP  + PN NG  P  NG
Sbjct: 239 EPDDPAPPLPVAPPPLHGPNNNGNGPAQNG 268


>Z81044-11|CAB02809.2|  476|Caenorhabditis elegans Hypothetical
           protein C30H6.4 protein.
          Length = 476

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 408 TGPTTDPKGQETATNLLTTARTSLILPKITTLMETATNLSTTVHIT 545
           T PTT      T T + TT  ++   P  T+   T +  +TT+  T
Sbjct: 299 TEPTTSTSTPTTTTTMQTTTPSTTSTPTTTSTTTTTSASTTTISTT 344


>Z75711-1|CAB00032.1|  196|Caenorhabditis elegans Hypothetical
           protein K02B12.2 protein.
          Length = 196

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 477 LILPKITTLMETATNLSTTVHITWTLPKAD 566
           +I+   TT +++ T+LS   + TW LPK D
Sbjct: 18  VIVNHYTTHVKSTTDLSKCGNCTWVLPKLD 47


>Z68748-6|CAD27621.1|   88|Caenorhabditis elegans Hypothetical
           protein F13H10.6 protein.
          Length = 88

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 446 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDPPQGRPYFKPTP 586
           Y+P +  P     P    P   GY P   G YY    QG PY+   P
Sbjct: 3   YQPYNQPPPYTQQPGYPPPGSAGYVPQ-QGGYYPQGQQG-PYYPQQP 47


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,272,722
Number of Sequences: 27780
Number of extensions: 296495
Number of successful extensions: 864
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)