Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15h23f
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    29   0.31 
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    29   0.41 
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   1.6  
SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces pombe...    26   2.9  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   5.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   6.7  
SPAC15A10.13 |ppk3||serine/threonine protein kinase Ppk3|Schizos...    25   8.8  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    25   8.8  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    25   8.8  

>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 198 FSTFPSDDELYCARFTITPLTPD 130
           FSTF  DD  Y +RF+  P+ P+
Sbjct: 187 FSTFTIDDSRYLSRFSFPPMMPE 209


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 29.1 bits (62), Expect = 0.41
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 141 LTPDARTRDETENIFAKDIFSLN*VVSLELTEFINTSRRPTRLVLL 4
           LTP+A +  E E   +KDI + N ++ L +    + SR P  + L+
Sbjct: 597 LTPEATSEIEREKNESKDISTFNIILDLPVIREFDDSRPPAHIKLV 642


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 356 ATINYPFEKGPLSPRFRGEHALRRYPS 436
           +T  +P+ KG    RF   H+L R PS
Sbjct: 85  STSPFPYLKGSFDDRFSSTHSLTRQPS 111


>SPAC1F8.07c |||pyruvate decarboxylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 387 HCRLGSEVNMLYVATLQEKKGALLVSCA 470
           H + G E+       LQ K+G  L+ CA
Sbjct: 513 HAKTGEELTSAIKVALQNKEGPTLIECA 540


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 144 PLTPDARTRDETENIFAKDIFSLN*VVSLELT 49
           PLTP     +ET  I  KD   L  +VS+ +T
Sbjct: 336 PLTPGWSAHEETNRISPKDANVLPSIVSIPIT 367


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 173 SSSEGNVEKVYPQNIPGYKYVNAEEQ 250
           S+S  NV+++ PQN  G K  + EE+
Sbjct: 96  SNSLDNVQEINPQNTIGDKSAHTEEE 121


>SPAC15A10.13 |ppk3||serine/threonine protein kinase
           Ppk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 637

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 264 LKDMSCSSAFTYLYPGMFCG*TFSTFPSDDELYCARFTITPLTPD 130
           L D +C +  T  +P +      ST+ S   LY A  T+ P+T +
Sbjct: 64  LADRACETMKTLRHPCIIK--YLSTYKSSTHLYIATETVRPVTTE 106


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +2

Query: 440 EERCIACKLCEAICPAQAITI 502
           E  CI C +C   CP  AI I
Sbjct: 52  ETLCIGCGICVKKCPFGAINI 72


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 24.6 bits (51), Expect = 8.8
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +2

Query: 227 KYVNAEEQDMSFRAMSDRAAQ 289
           KYV + ++D+ + A+SD AA+
Sbjct: 9   KYVESSDKDIRYMALSDLAAR 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,074,799
Number of Sequences: 5004
Number of extensions: 40957
Number of successful extensions: 80
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)