Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15h23f
         (512 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U65579-1|AAB51776.1|  210|Homo sapiens mitochondrial NADH dehydr...   173   3e-43
BC119754-1|AAI19755.1|  210|Homo sapiens NADH dehydrogenase (ubi...   173   3e-43
AF038406-1|AAC34273.1|  210|Homo sapiens NADH dehydrogenase-ubiq...   173   3e-43
AK223114-1|BAD96834.1|  210|Homo sapiens NADH dehydrogenase (ubi...   172   5e-43

>U65579-1|AAB51776.1|  210|Homo sapiens mitochondrial NADH
           dehydrogenase-ubiquinone Fe-S protein 8, 23 kDa subunit
           prec protein.
          Length = 210

 Score =  173 bits (421), Expect = 3e-43
 Identities = 74/96 (77%), Positives = 88/96 (91%)
 Frame = +2

Query: 224 YKYVNAEEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPRF 403
           YKYVN ++ +M  ++++DRAA+T+ WTEL RG  +TL+++F+EPATINYPFEKGPLSPRF
Sbjct: 36  YKYVNMQDPEMDMKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRF 95

Query: 404 RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 511
           RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE
Sbjct: 96  RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 131



 Score = 31.9 bits (69), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 395 PRFRGEHALRRYPSGEERCIACKLCEAICPAQAI 496
           PR  G     RY     +CI C  C+  CP  AI
Sbjct: 132 PRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165


>BC119754-1|AAI19755.1|  210|Homo sapiens NADH dehydrogenase
           (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q
           reductas protein.
          Length = 210

 Score =  173 bits (421), Expect = 3e-43
 Identities = 74/96 (77%), Positives = 88/96 (91%)
 Frame = +2

Query: 224 YKYVNAEEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPRF 403
           YKYVN ++ +M  ++++DRAA+T+ WTEL RG  +TL+++F+EPATINYPFEKGPLSPRF
Sbjct: 36  YKYVNMQDPEMDMKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRF 95

Query: 404 RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 511
           RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE
Sbjct: 96  RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 131



 Score = 31.9 bits (69), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 395 PRFRGEHALRRYPSGEERCIACKLCEAICPAQAI 496
           PR  G     RY     +CI C  C+  CP  AI
Sbjct: 132 PRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165


>AF038406-1|AAC34273.1|  210|Homo sapiens NADH
           dehydrogenase-ubiquinone Fe-S protein 8 23 kDa subunit
           protein.
          Length = 210

 Score =  173 bits (421), Expect = 3e-43
 Identities = 74/96 (77%), Positives = 88/96 (91%)
 Frame = +2

Query: 224 YKYVNAEEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPRF 403
           YKYVN ++ +M  ++++DRAA+T+ WTEL RG  +TL+++F+EPATINYPFEKGPLSPRF
Sbjct: 36  YKYVNMQDPEMDMKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRF 95

Query: 404 RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 511
           RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE
Sbjct: 96  RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 131



 Score = 31.9 bits (69), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 395 PRFRGEHALRRYPSGEERCIACKLCEAICPAQAI 496
           PR  G     RY     +CI C  C+  CP  AI
Sbjct: 132 PRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165


>AK223114-1|BAD96834.1|  210|Homo sapiens NADH dehydrogenase
           (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q
           reductas protein.
          Length = 210

 Score =  172 bits (419), Expect = 5e-43
 Identities = 74/96 (77%), Positives = 87/96 (90%)
 Frame = +2

Query: 224 YKYVNAEEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPRF 403
           YKYVN ++ +M   +++DRAA+T+ WTEL RG  +TL+++F+EPATINYPFEKGPLSPRF
Sbjct: 36  YKYVNMQDPEMDMESVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRF 95

Query: 404 RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 511
           RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE
Sbjct: 96  RGEHALRRYPSGEERCIACKLCEAICPAQAITIEAE 131



 Score = 31.9 bits (69), Expect = 1.4
 Identities = 13/34 (38%), Positives = 15/34 (44%)
 Frame = +2

Query: 395 PRFRGEHALRRYPSGEERCIACKLCEAICPAQAI 496
           PR  G     RY     +CI C  C+  CP  AI
Sbjct: 132 PRTDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 165


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,220,410
Number of Sequences: 237096
Number of extensions: 1512490
Number of successful extensions: 7018
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7018
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4820001670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)