Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15h14f
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy...    28   0.92 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   4.9  
SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr...    26   4.9  
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    25   6.5  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   8.6  

>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 28/87 (32%), Positives = 37/87 (42%)
 Frame = -1

Query: 389 TAVRSPGPSAPDAELPPNDCLFENIDSEFSFSFNCCISLSTA**NTWYCTSPACGTSSGS 210
           TA+ SPGP +    +  N        S  S S +   S ST   ++    S     SSGS
Sbjct: 399 TALVSPGPHSVSTTINTNIVQATISQSSTSGSSSGSSSASTTASSS--SVSSGSSISSGS 456

Query: 209 SQRS*HCDHSSVPATEVQGSSRGSSTA 129
           S  S     +S  +    GSS GSS+A
Sbjct: 457 SSMSTSYTSASGSSAHSSGSSSGSSSA 483


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = -1

Query: 224 TSSGSSQRS*HCDHSSVPATEVQGSSRGSSTACLF 120
           TSSGSS  S +   SS   T    SSR SS++  F
Sbjct: 738 TSSGSSSSSSYTPASSTSTTTSSVSSRQSSSSSSF 772


>SPAC11D3.13 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +3

Query: 6   LGGAVLGARQGPVLQPALRD-VGQAFQRHSKQILNNFVAEQTSRRAAATRTLHF 164
           +GG +     GPV+ P ++D  G +  +       N +AEQ           HF
Sbjct: 116 MGGVIAAVCHGPVILPCIKDSTGFSIVKGKTVTAFNEIAEQQMNLMPTFEKYHF 169


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 76  PSNVTPNRSSIISSPNKQAVELPRLEPCTSV 168
           PSN T + S  ++SP K +  +P L P + +
Sbjct: 456 PSNTTISSSPPLTSPVKTSANIPNLLPTSEL 486


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +1

Query: 1   GDWGEQFSEQDKALFYNPLYAMSAKPSNVTPNRSSIISSPNKQAVELPRLE 153
           GDW + F +   ++F  P    + + S++ P+R   I S  ++ +E+P L+
Sbjct: 143 GDWQDDFQDAVNSVFGLPETPKTIEESSLDPDR---ILSLWQKLIEMPVLQ 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.131    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,639,022
Number of Sequences: 5004
Number of extensions: 25493
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)