Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15h14f
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    26   0.25 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    26   0.25 
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.1  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 194 HCDHSSVPATEVQGSSRGSSTACLFGDEIIED 99
           HC H  +PA  +   S   S AC  G +++ D
Sbjct: 42  HCSHLCLPAPRINSKSPLLSCACPDGLKLLSD 73


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 194 HCDHSSVPATEVQGSSRGSSTACLFGDEIIED 99
           HC H  +PA  +   S   S AC  G +++ D
Sbjct: 42  HCSHLCLPAPRINSKSPLLSCACPDGLKLLSD 73


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 1   GDWGEQFSEQDKALFYNPLYAMSAKPSNVTPNRSSIISSPNKQ 129
           G +G   S     L+Y+PL + S    N  P   S   + N Q
Sbjct: 253 GIFGMALSPMTNNLYYSPLSSRSLYYVNTKPFMKSEYGANNVQ 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.131    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,832
Number of Sequences: 438
Number of extensions: 1653
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)