Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15h11f
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc... 171 6e-44
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 38 0.001
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 33 0.028
SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 33 0.028
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 28 1.1
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc... 26 4.3
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 26 5.7
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 25 7.5
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 7.5
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 7.5
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 9.9
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha... 25 9.9
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 25 9.9
SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces ... 25 9.9
>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 240
Score = 171 bits (417), Expect = 6e-44
Identities = 79/176 (44%), Positives = 124/176 (70%)
Frame = +1
Query: 61 MVLIAATVCTKSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQP 240
MV++A ++ + GKA++SRQF EM++ R+E LL++FP L++ Q+T VE+++VR+VYQP
Sbjct: 1 MVVLAVSIVNRGGKAIISRQFREMSRVRVESLLSSFPALVSEKSQNTTVESDNVRFVYQP 60
Query: 241 LDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALG 420
LD+LY++LIT SNIL+D++TL L S+VV C L E E+L AF + AFDE +LG
Sbjct: 61 LDELYIVLITNLQSNILQDIDTLHLLSQVVTSICSSLEEREILEYAFEIFTAFDEATSLG 120
Query: 421 YRESVNLAQVRSFVEMDSHEEKIYQAVRQTQXXXXXXXXXXXXXXLQRERLEAAKR 588
YR++V+L Q+++++EM+SHEEKI + V + + L+ ++ EAA+R
Sbjct: 121 YRDNVSLTQIKTYLEMESHEEKIQEIVSRNKEIEATEERKRRIKQLELQKKEAARR 176
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 38.3 bits (85), Expect = 0.001
Identities = 29/140 (20%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Frame = +1
Query: 73 AATVCTKSGKALVSRQF-VEMTKARIEGLLAAFPKLMTG-GRQHTFVETESVRYVYQPLD 246
A V GK ++SR + ++ + +E L ++ G + E + Y+Y +
Sbjct: 4 AIFVLNLKGKVIISRDYRADIPMSVVEKFLPLKSEVEEEQGFSTPCLTHEGINYIYIHHN 63
Query: 247 KLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYR 426
+Y+L ++ S+ +E L LR + V +Y +L E + + + DEI+ G+
Sbjct: 64 DVYLLALSKMNSDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEIMDFGFP 123
Query: 427 ESVNLAQVRSFVEMDSHEEK 486
++ ++ ++ S+ K
Sbjct: 124 QTTETKILQEYITQTSNTVK 143
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 33.5 bits (73), Expect = 0.028
Identities = 20/76 (26%), Positives = 34/76 (44%)
Frame = +1
Query: 193 QHTFVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLN 372
+H V S Y+Y + LY++ IT N++ LE L + + Y +L E V +
Sbjct: 43 RHPIVSIGSSTYIYTKHEDLYVVAITKGNPNVMIVLEFLESLIQDLTHYFGKLNENTVKD 102
Query: 373 QAFNLLFAFDEIVALG 420
+ DE++ G
Sbjct: 103 NVSFIFELLDEMIDYG 118
>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 143
Score = 33.5 bits (73), Expect = 0.028
Identities = 28/128 (21%), Positives = 51/128 (39%), Gaps = 3/128 (2%)
Frame = +1
Query: 91 KSGKALVSRQFVEMTKARIEGLLAAFPKLMTGGRQH---TFVETESVRYVYQPLDKLYML 261
+ GK +S+ +V L A +L++ Q F+E E+ + VY+ LY
Sbjct: 10 RHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWENSKLVYRRYAGLYFC 69
Query: 262 LITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAFNLLFAFDEIVALGYRESVNL 441
N L LE + F ++ + + E +++ + + DEI+ G N
Sbjct: 70 FCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIILGGEIGESNK 129
Query: 442 AQVRSFVE 465
V +E
Sbjct: 130 KSVLERIE 137
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 557 CSVRDWRRPNVASRRAHRCPSAVALVARRCPRRLH 661
C ++WRRP + A +CPS +A+ P ++
Sbjct: 189 CGRQNWRRPVNFASHAKQCPSFLAMDPNNIPPEIN 223
>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/87 (20%), Positives = 37/87 (42%)
Frame = +1
Query: 202 FVETESVRYVYQPLDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTETEVLNQAF 381
FVE + + VY+ L+ + + N L LE + F + +Y + E +++
Sbjct: 50 FVEYKGEKIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFE 109
Query: 382 NLLFAFDEIVALGYRESVNLAQVRSFV 462
+ +E++ G + + V S V
Sbjct: 110 KAYYVMEELLLAGELQESSKTNVLSAV 136
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 350 SCTQYSGTTLLKSLNVSRSSRMLLAFVVISNIYN 249
SC + L S+N + +SR LLA +V +I N
Sbjct: 134 SCDSNENLSTLSSVNQNFNSRQLLATIVPESIQN 167
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 25.4 bits (53), Expect = 7.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Frame = -1
Query: 200 VCCRPPVISLGKAASRPSMRAFVISTNW 117
+CC P +++ + +PS R+F W
Sbjct: 2128 LCCDPSRLNIEQELQKPSGRSFACKKRW 2155
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = +1
Query: 184 GGRQHTFVE-TESVRYVYQPLDKLYMLLITTKASNI 288
GGR T +E ++++ Y+ L KL++ LIT+K+S++
Sbjct: 664 GGRIVTRIEFLRALQFTYE-LRKLFIELITSKSSSV 698
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 7.5
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Frame = +1
Query: 241 LDKLYMLLITTKASNILEDLETLRLFSRVVPEYCVQLTET-EVLNQAFNLLFAFDEIVAL 417
L L MLL + I+E L + L S +PE C T E++N N IVA
Sbjct: 1197 LQCLKMLLEVSDRKLIVEKLRPILLPSFEIPEPCNTATSVQELINPEINQ--DDSPIVAS 1254
Query: 418 GYRESVNLAQVRSFVEMDSHEEKIYQAVRQTQ 513
Y + L + ++ + +E + A++Q Q
Sbjct: 1255 RYCTTSFLHRFYEYLLSGNKDEALTYALQQKQ 1286
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 9.9
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = -3
Query: 213 CFYKCMLPSSCH 178
C Y C+LP SCH
Sbjct: 642 CPYLCVLPKSCH 653
>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 310
Score = 25.0 bits (52), Expect = 9.9
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Frame = +2
Query: 509 PKNARQRTACANALRSCSVRDWRRPNVASRRAHRCPSA-VALVARRCPR-----RLHLNL 670
PK R +C N L+ ++ R P + P A V L A PR R+HL +
Sbjct: 16 PKKGRLYESCVNVLKGSDIKFRRNPRLDIALVQNLPIALVFLPAADIPRFVGTGRVHLGI 75
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 25.0 bits (52), Expect = 9.9
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = +1
Query: 214 ESVRYVYQPLDKLYMLLITTKASNILED--LET-LRLFSRVV 330
++VR V+Q LD+L +L +K +L D ET +RL++ +V
Sbjct: 197 KNVRVVFQGLDRLEQVLKESKGPFLLGDHLTETDVRLYTTIV 238
>SPBC15C4.01c |oca3||TPR repeat protein Oca3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 282
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/41 (31%), Positives = 26/41 (63%)
Frame = +1
Query: 115 RQFVEMTKARIEGLLAAFPKLMTGGRQHTFVETESVRYVYQ 237
+Q +E+++ ++ LL+ + ++ TF +TESVR +YQ
Sbjct: 223 QQLLELSRTELKRLLSKVNEKISD----TFPDTESVRQLYQ 259
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,708,018
Number of Sequences: 5004
Number of extensions: 53487
Number of successful extensions: 135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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