Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15h07f
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    28   1.1  
SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.9  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    27   3.3  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   5.8  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   5.8  
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac...    26   5.8  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    26   5.8  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   5.8  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   7.6  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    25   7.6  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    25   7.6  
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar...    25   7.6  

>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
 Frame = -1

Query: 208 DVSHAHLVRELSFCGQPSAYDTILVIARDILKVDWDRRYNYI----YSFHRNALRTSKKH 41
           D  H+H V++++FC   S Y+ ++  +RD   + WD R + I      F +  LR  K H
Sbjct: 224 DGYHSHSVKQVNFCND-SPYN-LVSCSRDGSIIFWDMRTHGITIDGEHFQKPVLRIRKAH 281

Query: 40  RTN 32
             +
Sbjct: 282 ENS 284


>SPCC1494.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 274

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 242 SIIHNEWILTAAHCVARRESFVIRLGL--TNLTRPELIMETVEKYVHPDYNVGST 400
           +++ +++++    C +  +S VIRLG+   NLT    + +   KY+  D  + +T
Sbjct: 78  NLLKDKFLILQVLCDSHTDSGVIRLGILKINLTEYVYVGQDTRKYLLADSKINAT 132


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 58  AGRSCGNCRCNYTFCPSPLSRYP 126
           +GRSC N  CNY +  +P+  YP
Sbjct: 433 SGRSCSN--CNYYYPYTPVGYYP 453


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 356 TVEKYVHPDYNVGSTAVQVDEIALLKLPRRVEYGRGYVPEVLSWVYQ 496
           T+ +YVH      + A+Q     LL    RV+YG+ Y  + +  +++
Sbjct: 693 TLFEYVHEFLRHVNPAIQKKGYKLLGTLLRVDYGKAYATQHVKEIFE 739


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -3

Query: 374 ARTSPL--SPLLTQDGS-GWSIPNGSRMIRVWPRNELLLES 261
           ART PL  SPLL +  S G +IP  SR   +  RN+L L+S
Sbjct: 51  ART-PLASSPLLFESSSPGPNIPQSSRSHLLSQRNDLFLDS 90


>SPAC630.14c |tup12||transcriptional corepressor Tup12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 18/75 (24%), Positives = 29/75 (38%)
 Frame = -3

Query: 389 HCSQGARTSPLSPLLTQDGSGWSIPNGSRMIRVWPRNELLLESIRCELWSPHTR*LRPQG 210
           H   G  T   SP    DG   +  +  ++IR+W  +  L+E +     S ++    P G
Sbjct: 415 HTDDGVTTVMFSP----DGQFIAAGSLDKVIRIWTSSGTLVEQLHGHEESVYSVAFSPDG 470

Query: 209 *RFARSPCKGTVLLW 165
                     T+ LW
Sbjct: 471 KYLVSGSLDNTIKLW 485


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 161 LATEGQFPYKVSVRNVSPVGGVSACGGSIIHNEWILTAA 277
           LA  G+  YKVS R++S V      GG+ +    IL  A
Sbjct: 114 LAKSGETAYKVSRRDLSYVASQRLNGGTTVAATMILARA 152


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 108 TGTEGIITSTVSTGTPCEPPKSTEQI 31
           T +  ++TS+ ST    +PPK T++I
Sbjct: 436 TQSTEVVTSSKSTSVDTKPPKKTQKI 461


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 305 VIRLGLTNLTRPELIMETVEKYVH-PDYNVGSTAV 406
           + +LG+   TR E IM+T+  ++H  D NV S  +
Sbjct: 841 LFKLGIKLCTRNEQIMKTIWSFIHVHDCNVISEVI 875


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 20  WWILICSVLFGGSQGVPVETVDVI 91
           WW++I  V+F     +P+  V  I
Sbjct: 490 WWVIIVGVIFSAVWFIPIGIVQAI 513


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +2

Query: 14  NMWWILICSVLFGGSQGVPVETVDVIIPSV 103
           NM W+++C  + G   G  +  V++II  +
Sbjct: 183 NMIWLIVCRAIQGLGGGGIISLVNIIISDI 212


>SPBC336.08 |spc24||spindle pole body protein
           Spc24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 198

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 497 LGITNEECLNWYPNSQTIKDQTLCAKYYNHTSQNICTGD 613
           L IT  E ++     Q +K+Q L  +   +TS++IC  +
Sbjct: 94  LNITENEIMSLESQLQKMKEQLLQLEERENTSEDICQSE 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,270
Number of Sequences: 5004
Number of extensions: 70408
Number of successful extensions: 201
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)