Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15h07f
(679 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0905 - 20722090-20722207,20722314-20722395,20722698-207228... 34 0.091
01_06_0456 + 29521282-29522064 32 0.49
01_06_0445 - 29441472-29442152,29442244-29442357,29442959-294431... 31 1.1
11_03_0073 - 9621199-9621312,9621401-9621476,9621553-9621619,962... 29 2.6
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 29 3.4
10_01_0193 - 2127691-2127834,2128175-2128244,2128463-2128561,212... 29 4.5
05_01_0172 + 1194563-1194934,1196051-1196120,1196769-1196833,119... 29 4.5
01_06_1506 + 37830468-37830600,37830703-37830920,37832078-378325... 29 4.5
05_02_0073 + 6336649-6336710,6336846-6336894,6338079-6338468,633... 28 6.0
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 28 6.0
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 28 6.0
05_03_0157 - 9027777-9027862,9028142-9029357 28 7.9
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 28 7.9
02_02_0689 - 12977244-12977501 28 7.9
02_02_0630 - 12395305-12395598,12396790-12396882 28 7.9
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 28 7.9
>04_03_0905 -
20722090-20722207,20722314-20722395,20722698-20722851,
20723026-20723089,20724282-20724404,20725326-20725452,
20725541-20726171
Length = 432
Score = 34.3 bits (75), Expect = 0.091
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -3
Query: 488 PNSRPRGHSRVHTPHDGAASGERSHQPARRWSRHCSQGARTSP 360
P+ PR H PH R + RRW CS+ AR P
Sbjct: 156 PSMAPRRHREPEPPHPVLPPAGRRSEAGRRWRWRCSETARAPP 198
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.49
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -3
Query: 461 RVHTPHDGAASGERSHQ--PARRWSRHCSQGARTSPLSPLLTQDGSG 327
R ++P GA G R + PA SR CS+ R L P +T +G
Sbjct: 14 RCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAAAG 60
>01_06_0445 -
29441472-29442152,29442244-29442357,29442959-29443186,
29443284-29443586
Length = 441
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = -3
Query: 464 SRVHTPHDGAASGERSHQPARRWSRHCSQGARTSPLSPLLTQDGSGWSIPNGS 306
S++H H+GA ER+ A+ R + G R S + L G+G + N S
Sbjct: 192 SKIHMRHEGAIKRERARTYAQSHQRCSNHGGRPSSPAVSLKHHGNGATRSNHS 244
>11_03_0073 -
9621199-9621312,9621401-9621476,9621553-9621619,
9621655-9621751,9621898-9621996,9622348-9622358,
9622716-9622784,9622871-9623195,9623287-9623457,
9623538-9623713,9624173-9624414,9624481-9624542,
9625305-9625340,9626103-9626262,9626372-9626606,
9626694-9626949,9627062-9627176,9628388-9628450,
9628592-9629325
Length = 1035
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 126 GIS*KWTGTEGIITSTVSTGTP-CEPPKSTEQIKIHHMFD*FA 1
GIS +TGT+ IT + TGTP PP+ ++ I + +D F+
Sbjct: 447 GISKHFTGTKTHITISKPTGTPRYMPPEYLNKLVISNKYDVFS 489
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = -3
Query: 500 PIDRPNSRPRGHSRVHTPHDGAASGERSHQPARRWS-RHCSQGARTSPLSPLLTQDGSGW 324
P P G V+ G A G + Q ++ S RHC G L L ++ S W
Sbjct: 518 PSKPPMPAKSGRLTVNPSKRGGAGGGANKQLQKQKSDRHCDDGITIDQLHRLSQKNISAW 577
Query: 323 SIPNGSRMIR 294
S+ +++R
Sbjct: 578 SMKRLMKIVR 587
>10_01_0193 -
2127691-2127834,2128175-2128244,2128463-2128561,
2128676-2128811,2128889-2128973
Length = 177
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 461 RVHTPHDGAASGERSHQPARRWSRHCSQGART 366
R T HD A G+ S + RW RH + A+T
Sbjct: 74 REMTSHDARADGDGSDWRSNRWVRHFGRVAQT 105
>05_01_0172 +
1194563-1194934,1196051-1196120,1196769-1196833,
1197608-1197958
Length = 285
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 527 WYPNSQTIKDQTLCAKYYNHTSQNICTGDSGGPLTMDDLDGS 652
W S K T CA YN+ ++ T + G P ++D+D S
Sbjct: 166 WQSKSGCCKPPTSCA--YNYVNETFWTANPGVPTVVNDVDCS 205
>01_06_1506 +
37830468-37830600,37830703-37830920,37832078-37832529,
37832595-37833402,37834986-37835073,37835196-37835299,
37835402-37835483,37836670-37836923
Length = 712
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 572 KYYNHTSQNICTGDSGGPLTMDDLDGSPTIVXITNF 679
K+ H + TG + P M+D+ GSP + NF
Sbjct: 582 KHVTHIGWDSPTGSAASPSWMNDMKGSPDYSSLNNF 617
>05_02_0073 +
6336649-6336710,6336846-6336894,6338079-6338468,
6338677-6338902,6338983-6339270,6339594-6339967,
6340044-6340736
Length = 693
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +2
Query: 161 LATEGQFPYKVSVRNVSPVGGVSACGGSIIHNEWILTAAHCVARRES 301
LA++ FPYKV V+ V ++ C ++HN WIL AH + ES
Sbjct: 310 LASKPYFPYKVQVKIV-----IACC---VLHN-WILDNAHTMDIGES 347
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 416 HQPARRWSRHCSQGARTSPLSPLLTQDGSGWSIPNGSRMIRVWPR 282
H P+ + + T P SP +T+DG S +R+I V PR
Sbjct: 155 HSPSTPEKTQAATPSATQPPSPAVTEDGRTNSPATPNRIIPVTPR 199
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/33 (27%), Positives = 16/33 (48%)
Frame = +2
Query: 452 YGRGYVPEVLSWVYQLGITNEECLNWYPNSQTI 550
Y G +L W Y + + + C W P ++T+
Sbjct: 55 YDVGQFKNILGWSYLVTVLAQSCREWPPRNETL 87
>05_03_0157 - 9027777-9027862,9028142-9029357
Length = 433
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = -3
Query: 347 LTQDGSGWSIPNGSRMIRVWPRNELLLES 261
L DG GW++ + + R+WP ++ L ++
Sbjct: 311 LDDDGGGWTLEHRVALSRLWPHDQNLCKN 339
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 440 GAASGERSHQPARRWSRHCSQGARTSPLSPLLTQDGSGWSIPNGS 306
G+ SG RS + R W+RH Q SP + S S+ NGS
Sbjct: 870 GSGSGSRSLRRLRAWARHYDQ---KDLKSPTFKRRWSDESVRNGS 911
>02_02_0689 - 12977244-12977501
Length = 85
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +1
Query: 172 RTVPLQGERAKRQPCGRSQRVW 237
R P G R PCGR RVW
Sbjct: 9 REAPAGGSRGNLLPCGRKIRVW 30
>02_02_0630 - 12395305-12395598,12396790-12396882
Length = 128
Score = 27.9 bits (59), Expect = 7.9
Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Frame = -3
Query: 500 PIDRPNSRPRGHSRVHTPHDGAASGERSHQPARRWSRHCSQGARTSPLSPL-LTQDGS-- 330
P+ P S V+ P GA+ R RRWS R P++ L +T D S
Sbjct: 37 PLHSPPSHEGDAVSVNPPGGGASRRGRHVWCRRRWS---GADGRADPVADLDVTMDSSDQ 93
Query: 329 GWSIPNGSRMIRV 291
GW+ P + M V
Sbjct: 94 GWAKPRQNPMAAV 106
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -3
Query: 479 RPRGHSRVHTPHDGAASGERSHQPARRWSRHCSQG 375
R RGHS + D + G+R H+ + RH G
Sbjct: 1121 RRRGHSSSDSESDSDSDGDRKHRKRKDRKRHRKHG 1155
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,689,303
Number of Sequences: 37544
Number of extensions: 551361
Number of successful extensions: 1629
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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