Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15g22f
         (550 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom...    26   3.2  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   4.2  
SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...    25   7.3  
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...    25   7.3  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    25   9.7  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    25   9.7  

>SPAC1556.02c |sdh1||succinate dehydrogenase
           Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 641

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 101 GLRATF*LARIGFITETLLMTILTRAFAV 15
           GLRATF LA  GF T  +     TR+  V
Sbjct: 66  GLRATFGLAEAGFNTACITKLFPTRSHTV 94


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 117 SDNDDRLESDILISKNRFYH 58
           SD++D    DIL   NRFYH
Sbjct: 227 SDDEDLRVVDILYDGNRFYH 246


>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 188 YNKSHISTRNTVERCFGVLKRRCPC 262
           +NKSH   R   +R F + K  C C
Sbjct: 12  HNKSHTICRRCGKRSFHIQKSTCAC 36


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 188 YNKSHISTRNTVERCFGVLKRRCPC 262
           +NKSH   R   +R F + K  C C
Sbjct: 12  HNKSHTICRRCGKRSFHIQKSTCAC 36


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
 Frame = +2

Query: 299 ILQVIVACVVLHNICI-----ELNEVDPPEDIEISVDSPN 403
           +LQ  +  VVL NIC+     EL E DP E +   ++  N
Sbjct: 330 VLQQFIELVVLPNICLRESDEELFEDDPLEYVRRDLEGSN 369


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 543 MYFIYFLSYYLYTN 502
           + F YF+SYY+++N
Sbjct: 358 LIFTYFMSYYIFSN 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,736
Number of Sequences: 5004
Number of extensions: 35967
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)