Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15g21f
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte... 46 6e-06
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 42 8e-05
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa... 40 3e-04
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi... 35 0.009
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 33 0.046
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 27 1.7
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 7.0
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 25 7.0
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 9.3
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual 25 9.3
>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 45.6 bits (103), Expect = 6e-06
Identities = 28/125 (22%), Positives = 60/125 (48%)
Frame = +1
Query: 250 TALLQEKQARRHNSLREVTFSQYMTVSILCFVNLINYMDRLTIAGVLNNVKTEFEIGDGK 429
T+LL + +R+ E++ +++ + L ++ +D +A + + +EF++ +
Sbjct: 12 TSLLYPEVSRKKE---ELSVNKWTILPALWVGGFLSALDMTIVASLYPVIGSEFKLMNN- 67
Query: 430 AGFLQTVFVVAYMLFAPIFGYLGDRYSRRVIMASGVALWSLTTFFGSFLHDYESFAFFRG 609
A ++ T +++ F P++G L D + RR + A ++L TF+ R
Sbjct: 68 ASYIVTAYLITNTAFQPLYGRLSDIFGRRPTVVFANAAFTLGTFWCGISRSLPELCMARA 127
Query: 610 LVGIG 624
L GIG
Sbjct: 128 LAGIG 132
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 41.9 bits (94), Expect = 8e-05
Identities = 21/101 (20%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Frame = +1
Query: 331 ILCFVNLINYMDRLTIA-GVLNNVKTEFEIGDGKAGFLQTVFVVAYMLFAPIFGYLGDRY 507
+LC ++ YMD+ T + ++T+ + + ++ T F + +M+F+ L ++
Sbjct: 55 LLCLISAFQYMDKSTSNYSSIMGIRTDLNMVGNQYNWVGTSFYLGFMVFSLPLSTLLQKF 114
Query: 508 SRRVIMASGVALWSLTTFFGSFLHDYESFAFFRGLVGIGEA 630
+ ++ + W + +H Y S+ R L+GI E+
Sbjct: 115 PLSKVTSAFIVAWGILMTLTCLVHSYASYIATRTLLGILES 155
>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 39.9 bits (89), Expect = 3e-04
Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Frame = +1
Query: 316 YMTVSILCFVNLINYMDRLTIAGV-LNNVKTEFEIGDGKAGFLQTVFVVAYMLFAPIFGY 492
+ +S C INY+DR +I L+ ++ + ++ + + VF Y++ Y
Sbjct: 30 WFILSYCCVSYFINYLDRSSINNAYLSGMQEDLKMHGNELQDINVVFTCGYIIGQLPGSY 89
Query: 493 LGDRYSRRVIMASGVALWSLTTFFGSFLHDYESFAFFRGLVGIGEAS 633
R R+ + LW L T F +H + R + + EAS
Sbjct: 90 ALQRVPARLWFSVMNILWGLMTIFSFAVHSVRALMILRFFMAVAEAS 136
>SPAC1002.16c |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 35.1 bits (77), Expect = 0.009
Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = +1
Query: 349 LINYMDRLTIAGV-LNNVKTEFEIGDGKAGFLQTVFVVAYMLFAPIFGYLGDRYSRRVIM 525
L+ ++DR I + + + ++ + + +VF V ++LF L + + ++
Sbjct: 68 LVAFLDRSNIGNAKVAGLPEDLKLKGDQFNIIASVFYVTFILFEMPTTLLMKKVQPKRML 127
Query: 526 ASGVALWSLTTFFGSFLHDYESFAFFRGLVGIGEA 630
A V +SLTT F F H++ R ++G EA
Sbjct: 128 AFIVISYSLTTIFTGFCHNFGGLLAARLVLGFCEA 162
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 32.7 bits (71), Expect = 0.046
Identities = 23/119 (19%), Positives = 48/119 (40%)
Frame = +1
Query: 268 KQARRHNSLREVTFSQYMTVSILCFVNLINYMDRLTIAGVLNNVKTEFEIGDGKAGFLQT 447
+ A N++ V+ S+ + +L V + +D +A + EF + + T
Sbjct: 75 QDAATTNTVSTVSVSKVLPALLLGVV--LAALDNTIVASTYTKIGAEFG-KFSQVSWTAT 131
Query: 448 VFVVAYMLFAPIFGYLGDRYSRRVIMASGVALWSLTTFFGSFLHDYESFAFFRGLVGIG 624
++++ F P+FG D Y R+ + + ++ + F R + GIG
Sbjct: 132 AYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVAARAIAGIG 190
Score = 27.1 bits (57), Expect = 2.3
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Frame = +1
Query: 433 GFLQTVFVVAYMLFAPIFGYLGDRYSRRV---IMASGVALWSLTTFFGSFL--HDYESF 594
G + F + L P+ GY D+Y+ R+ I +A+ L +F L H++ SF
Sbjct: 216 GIINVFFAIGSSLGGPVGGYFADQYTWRIGFLIQVPLIAIAFLCVYFTLNLPHHNHVSF 274
>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 541 LWSLTTFFGSFLHDYESFAFFRGLVG 618
LW+ +T+ G ++DY F GL G
Sbjct: 106 LWAQSTYAGGIVNDYTDFFTVNGLTG 131
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = -1
Query: 635 YEASPIPTRPRKNANDS*SCKNEPKKVVRLQSATPLAIMTRLEYL 501
+++S IPT+P +A+ + + ++ L P I +++EYL
Sbjct: 8 HDSSNIPTQPSPSASPKSNKPSSAQRFGNLPWVAPDVIQSQIEYL 52
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -3
Query: 465 VRDDEHCL*KSSLAITNFEFSFDII*NTGDSQSVHVVDEVNE 340
V+D+EH L S +I + E +F + ++ HVVD V +
Sbjct: 12 VKDNEHSLDLSIKSIPSNEKNFSTEKSENEASESHVVDVVKD 53
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.0 bits (52), Expect = 9.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = -1
Query: 290 LLCLLACFSCRSAVAESLSPFITNCWFEVFGVIPRGSMITRVS 162
LLC C CR + +S SPFI + + I + S T ++
Sbjct: 1420 LLCAQEC--CRILLTDSKSPFILEVFSAILEYICQASTKTAIN 1460
>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 25.0 bits (52), Expect = 9.3
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Frame = +1
Query: 370 LTIAGVLNNVKTEFEIGDGKAGFLQTVFVVAY-----MLFAPIFGYLGDRYSRRV 519
+T VL+ E G K +FV A+ M F P YLG+++S RV
Sbjct: 10 VTAIAVLSTAN-ESSSGQEKLAVESILFVFAHPDDESMFFGPTIDYLGNQHSTRV 63
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,812
Number of Sequences: 5004
Number of extensions: 49381
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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