Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15g18f
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    27   3.1  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   5.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   5.5  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.5  

>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/63 (23%), Positives = 31/63 (49%)
 Frame = +1

Query: 406 DPIYRSGAMKKSTASRKNVIAKSLNRPLILYREPGPRVQCSIIKIKKKLYVYMVLLFLNV 585
           DP  + GA   S  +++   + S++ P +LY      V C ++++   ++   VL+  N+
Sbjct: 152 DPESQPGADPSSRKTKETSQSHSISYPRLLYSSAFIYVACLLLRLPLTIHKLEVLIRKNI 211

Query: 586 NIY 594
             Y
Sbjct: 212 IPY 214


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 379 WRDLSSPGPDPIYRSGAMKKSTASRKNVIAKS 474
           W +  +P   P Y +  +KKST  R + I K+
Sbjct: 9   WTEHKAPSGIPYYWNAELKKSTYQRPSFIEKN 40


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 430 MKKSTASRKN-VIAKSLNRPLILYREPGPRVQCSIIKIKKKLYVYMVLLFLN 582
           +KKS    KN VI     R +++ +   P V       + K Y+Y+V+ +LN
Sbjct: 620 LKKSNMIAKNQVINVRAERAILMSQGESPFVAKLYYTFQSKDYLYLVMEYLN 671


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 374 TTCLAICRSKLNYSGTLNYTTAAP 303
           +TC  I  S L+YSGT++ T+ AP
Sbjct: 112 STC-TISTSSLSYSGTISSTSIAP 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,643,070
Number of Sequences: 5004
Number of extensions: 53219
Number of successful extensions: 112
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)