Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15g07f
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces pomb...    30   0.23 
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    28   0.92 
SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...    27   2.1  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    26   3.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   3.7  
SPBC1718.02 |hop1||linear element associated protein Hop1|Schizo...    25   8.6  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   8.6  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    25   8.6  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    25   8.6  

>SPCC1739.14 |npp106||nucleoporin Npp106|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 933

 Score = 30.3 bits (65), Expect = 0.23
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 414 PFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY*ENRMKSLKWKLKLYSI 569
           P +   + + ++K+RNL +     R  DT  +++  E+ M + + + K+YSI
Sbjct: 45  PVIQYGLNQLEEKARNLESKVLLTRDGDTKAHYLLAESGMNAEQTRQKIYSI 96


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 28.3 bits (60), Expect = 0.92
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 342 SLRRSGAFHVAIAAHVHGVPSPGQLLIR-NQARVVECVVL 226
           +L R  AF +  +  VH  P PG +L+R NQA + + V+L
Sbjct: 325 NLFRFLAFQMFHSKQVHCDPHPGNILVRKNQAGLCQTVIL 364


>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +3

Query: 357 VEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY 518
           V +L +E+D+  Q  +   P +  +  EN+K +    +   +G  +  NP  +Y
Sbjct: 377 VNDLLQELDKNSQNDNGHGPTMETNTTENQKDNARGQSNKGHGFSTSLNPYTLY 430


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/44 (20%), Positives = 19/44 (43%)
 Frame = -3

Query: 194 IRPVACMSSTLRLMEATLAHSTTAITNTTSHAQLNTLTIMIVSN 63
           + P  C + T+   +    H+T  +   + H +LN    ++  N
Sbjct: 342 VNPTQCEALTMVCAQVMGNHATITVAGASGHCELNVFKPLLAKN 385


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = -3

Query: 170  STLRLMEATLAHST-TAITNTTSHAQLNTLTIMIVSNSIVLNDRSHV 33
            ST   M  T++H+T T+ + TTSH   NTL     ++  + +  S V
Sbjct: 3716 STGSTMHNTVSHATSTSSSFTTSHLPTNTLASTFDNSQSIFSSSSGV 3762


>SPBC1718.02 |hop1||linear element associated protein
           Hop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 528

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 359 RRVN*RD--RPEAAEAVDRPAFPAAKHRRKQEEEQEPLQ 469
           +RVN R   RPE  E ++RP   +     K+ +  +PL+
Sbjct: 489 QRVNMRSFLRPERMEVIERPKKVSKTSNTKETDTMKPLR 527


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/58 (22%), Positives = 26/58 (44%)
 Frame = +3

Query: 369 TREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTANGRQSDTNPNFIY*ENRMKSL 542
           T  ++  ++  +TA   L+   E    ++       ++  + +  PN I  EN +KSL
Sbjct: 434 TEGLEDEKEENNTAAESLINQEETTSGEAVTKSTVESSANEEEAEPNEIIEENAVKSL 491


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 348 GQFVEELTREIDQRQQRQSTAPPFLLQSIEENKKKSRNLYNPTAN-GRQSD 497
           G   +E++  +  R Q  ST P  L  S+E N   +   +NP  + G Q+D
Sbjct: 302 GSDEQEVSSMMGNRWQHSST-PASLFNSVERNNSLTAVAHNPPGSIGWQTD 351


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 329 LALSTSPSLPTYM---EYPRLDNSSSGTRPGL 243
           L +STS + PTY+   E  R  ++ SGT P +
Sbjct: 131 LVISTSNTAPTYISMIESSRASSTHSGTAPSI 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,369
Number of Sequences: 5004
Number of extensions: 57339
Number of successful extensions: 174
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)