Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15g07f
         (607 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025464-2|AAN84804.1|  496|Caenorhabditis elegans Prion-like-(q...    30   1.5  
AF025464-1|AAN84805.1|  529|Caenorhabditis elegans Prion-like-(q...    30   1.5  
AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AF025464-2|AAN84804.1|  496|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform a protein.
          Length = 496

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 112 VFVMAVVLCARVASIRRRVDDMQATGRMRVQKLKMNSDKNHAF-HNPGLVPDEELSRRG 285
           +FV A + CA   +  RR++D+ A+   R+  +  + + NH         P+ ++ R G
Sbjct: 43  LFVFAPLQCANCYNFLRRLNDLAASRAYRIHVVAPDFESNHIIQRTSSAFPNLQIDRAG 101


>AF025464-1|AAN84805.1|  529|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
           isoform b protein.
          Length = 529

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 112 VFVMAVVLCARVASIRRRVDDMQATGRMRVQKLKMNSDKNHAF-HNPGLVPDEELSRRG 285
           +FV A + CA   +  RR++D+ A+   R+  +  + + NH         P+ ++ R G
Sbjct: 65  LFVFAPLQCANCYNFLRRLNDLAASRAYRIHVVAPDFESNHIIQRTSSAFPNLQIDRAG 123


>AF026205-6|AAM69068.1|  908|Caenorhabditis elegans Hypothetical
           protein T23E7.2e protein.
          Length = 908

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 367 NSSTNCP--PVAPKVWRFPRRHRCPRTWSTLAWTTPHQEP 254
           N +T  P  P  PK  R PR  + PRT  T A   P  EP
Sbjct: 460 NLTTPAPKTPKTPKTPRTPRTPKTPRTPKTPAVVEPEPEP 499


>AF026205-5|AAB71258.1|  880|Caenorhabditis elegans Hypothetical
           protein T23E7.2b protein.
          Length = 880

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 367 NSSTNCP--PVAPKVWRFPRRHRCPRTWSTLAWTTPHQEP 254
           N +T  P  P  PK  R PR  + PRT  T A   P  EP
Sbjct: 410 NLTTPAPKTPKTPKTPRTPRTPKTPRTPKTPAVVEPEPEP 449


>AF026205-4|AAD47129.1|  885|Caenorhabditis elegans Hypothetical
           protein T23E7.2c protein.
          Length = 885

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 367 NSSTNCP--PVAPKVWRFPRRHRCPRTWSTLAWTTPHQEP 254
           N +T  P  P  PK  R PR  + PRT  T A   P  EP
Sbjct: 460 NLTTPAPKTPKTPKTPRTPRTPKTPRTPKTPAVVEPEPEP 499


>AF026205-3|AAB71257.1|  930|Caenorhabditis elegans Hypothetical
           protein T23E7.2a protein.
          Length = 930

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = -1

Query: 367 NSSTNCP--PVAPKVWRFPRRHRCPRTWSTLAWTTPHQEP 254
           N +T  P  P  PK  R PR  + PRT  T A   P  EP
Sbjct: 460 NLTTPAPKTPKTPKTPRTPRTPKTPRTPKTPAVVEPEPEP 499


>Z92834-1|CAB07382.1|  564|Caenorhabditis elegans Hypothetical
           protein F39B2.1 protein.
          Length = 564

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 144 PRAQHHCHHEHNQPCAAEHAHY 79
           P A  H HH H+Q    +H HY
Sbjct: 44  PTAPPHHHHHHHQHQPQQHLHY 65


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical protein
            F42C5.10 protein.
          Length = 1292

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 135  QHHCHHEHNQPCAAEHAHYY 76
            QHH HH H     +EH H+Y
Sbjct: 946  QHH-HHHHYHTDGSEHVHHY 964


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 132 HHCHHEHNQPCAAEHAHYYDRFQLH 58
           H  HHEH     A H H+ D+   H
Sbjct: 689 HGAHHEHGAHHGAHHGHHDDKENHH 713


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,285,667
Number of Sequences: 27780
Number of extensions: 349987
Number of successful extensions: 1316
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1300
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)