Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15g05f
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 233 2e-62
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 60 3e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 41 2e-04
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc... 26 3.8
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 26 5.0
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 25 6.6
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 6.6
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 6.6
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 6.6
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 8.8
SPCC1450.05c |rox3|med19|RNA polymerase II holoenzyme mediator c... 25 8.8
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 233 bits (570), Expect = 2e-62
Identities = 110/152 (72%), Positives = 131/152 (86%)
Frame = +2
Query: 164 EISTILEERILGAAPKADLEETGRVLSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNL 343
E+ +ILEERI GA +A + E+GRVLSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNL
Sbjct: 35 EVPSILEERIRGAYNQAQMMESGRVLSIGDGIARISGLSNVQAEELVEFSSGIKGMALNL 94
Query: 344 EPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSR 523
E D VG V+FGND+L++EG++VKRT IVDVPVGE +LGRVVDALGNPIDGKGPI T R
Sbjct: 95 EADTVGCVLFGNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGPIKTTER 154
Query: 524 MRVGIKAPGIIPRVSVREPMQTGIKAVDSLVP 619
RV +KAPGI+PR SV EPMQTG+KA+DS+VP
Sbjct: 155 RRVQLKAPGILPRTSVCEPMQTGLKAIDSMVP 186
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 59.7 bits (138), Expect = 3e-10
Identities = 29/86 (33%), Positives = 48/86 (55%)
Frame = +2
Query: 362 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIK 541
+ + G + L++ G V TG+ + +PVG LGR+++ +G P+D +GPI +
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHAD 166
Query: 542 APGIIPRVSVREPMQTGIKAVDSLVP 619
AP + + E ++TGIK VD L P
Sbjct: 167 APSFEEQSTTPEILETGIKVVDLLAP 192
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Frame = +2
Query: 416 TGAIVDVPVGEQILGRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP--RVSVREPMQT 589
TG + +PV E +LGRV + G PID KGP + + + I I P R+ E +QT
Sbjct: 92 TGHSMRIPVSEDMLGRVFNGSGLPID-KGP-NLLAEDYLDINGSPINPYARIYPEEMIQT 149
Query: 590 GIKAVDSL 613
GI ++D L
Sbjct: 150 GISSIDGL 157
>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
Mis17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 613 QRVNSLDTSLHRLTHRHPGNDT 548
QR++SLD+S HPGN T
Sbjct: 172 QRLSSLDSSQDSFQEEHPGNVT 193
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = -3
Query: 302 PSPQPGCSSSHKHERYHHQCSRH-DQSLLDQPWAR 201
P P G HK ++ CS H D S+ ++P A+
Sbjct: 405 PVPHNGTKPDHKPWKHEEHCSCHEDHSVHERPSAK 439
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 448 LSDGNVYDSTSTLDNISFLDKLVIT 374
L GN+Y+STS + +S LD IT
Sbjct: 49 LEVGNIYNSTSASEILSTLDAKYIT 73
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 6.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 589 SLHRLTHRHPGNDTWRLNTDPHTGFR 512
SLH T H +D R N+DP + R
Sbjct: 428 SLHDSTTSHNKSDLMRTNSDPQSAMR 453
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -2
Query: 465 TRPRICSPTGTSTIAP 418
TRPR+ +P+ +ST+ P
Sbjct: 55 TRPRVSAPSSSSTVVP 70
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 123 HLANYMSQPPTKLPRSPPSSKRGSLEP 203
H +Y+S P SPP+SK S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +3
Query: 111 QWPWHLANYMSQPPTKLPRSPPSSK 185
Q P H N+ S PP P SP SSK
Sbjct: 687 QAPEHARNF-SSPPFTRPASPSSSK 710
>SPCC1450.05c |rox3|med19|RNA polymerase II holoenzyme mediator
complex subunit Med19 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 138
Score = 25.0 bits (52), Expect = 8.8
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 425 IVDVPVGEQIL--GRVVDALGNPIDGKGPIDTKSRMRVGIKAPGIIP 559
I D+P +IL + L NPI + PID + V PGIIP
Sbjct: 59 IQDLPGYNEILRDNTIKQWLTNPIREEVPIDIEFLHHVFSVEPGIIP 105
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,384
Number of Sequences: 5004
Number of extensions: 54261
Number of successful extensions: 178
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -