Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15g05f
(619 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 25 0.78
AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 22 4.2
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 21 7.3
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 21 9.6
DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein ... 21 9.6
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 21 9.6
AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 21 9.6
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 9.6
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 9.6
AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice... 21 9.6
AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein ... 21 9.6
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 9.6
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 24.6 bits (51), Expect = 0.78
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 550 TWRLNTDPHTGFRVDWSLAINR 485
T +L+TDP+T F+V+ S I R
Sbjct: 680 TEKLSTDPNTHFQVNQSHGIKR 701
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 469 YYTPKDLLSDGNVYDSTSTLDNISFLDK 386
+Y P+DL ++Y++ L+ SF K
Sbjct: 346 FYHPEDLPFIKDIYETVIKLEGASFRSK 373
>AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein.
Length = 238
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -1
Query: 469 YYTPKDLLSDGNVYDSTSTLDNISFLDK 386
+Y P+DL ++Y++ L+ SF K
Sbjct: 52 FYHPEDLPFIKDIYETVIKLEGASFRSK 79
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -3
Query: 287 GCSSSHKHERYHHQCSRHDQS 225
G S H++ HH S H Q+
Sbjct: 804 GDQSQPPHQQLHHHQSTHPQA 824
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 21.0 bits (42), Expect = 9.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 466 YTPKDLLSDGNVYDSTSTLDNISF 395
YTP+ L GNV + +S N F
Sbjct: 356 YTPEGLNMLGNVIEGSSDSINTKF 379
>DQ855483-1|ABH88170.1| 117|Apis mellifera chemosensory protein 2
protein.
Length = 117
Score = 21.0 bits (42), Expect = 9.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 197 GAAPKADLEETGRVLSIGDGIARVY 271
GA P+ EET ++ + I R Y
Sbjct: 78 GACPQCSPEETRQIKKVLSHIQRTY 102
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.0 bits (42), Expect = 9.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +2
Query: 209 KADLEETGRVLSIGDG 256
K D+EETGR G G
Sbjct: 72 KTDIEETGRGKGRGHG 87
>AY739659-1|AAU85298.1| 288|Apis mellifera
hyperpolarization-activated ion channelvariant T
protein.
Length = 288
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -2
Query: 207 GAAPRILSSRMVEISAALWVVETCS 133
G+ ++ R+ + +A WV+ CS
Sbjct: 61 GSKKALMKERIRQKAAGHWVIHPCS 85
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -2
Query: 207 GAAPRILSSRMVEISAALWVVETCS 133
G+ ++ R+ + +A WV+ CS
Sbjct: 61 GSKKALMKERIRQKAAGHWVIHPCS 85
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.0 bits (42), Expect = 9.6
Identities = 7/25 (28%), Positives = 14/25 (56%)
Frame = -2
Query: 207 GAAPRILSSRMVEISAALWVVETCS 133
G+ ++ R+ + +A WV+ CS
Sbjct: 61 GSKKALMKERIRQKAAGHWVIHPCS 85
>AY268031-1|AAP23056.1| 810|Apis mellifera dorsal protein splice
variant B protein.
Length = 810
Score = 21.0 bits (42), Expect = 9.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = -2
Query: 81 AALGKRLATEPAIRAEISDIFHKLI 7
++ GK LATEP + + ++ F + I
Sbjct: 347 SSFGKILATEPTLFSNVTPKFPRNI 371
>AJ973398-1|CAJ01445.1| 117|Apis mellifera hypothetical protein
protein.
Length = 117
Score = 21.0 bits (42), Expect = 9.6
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 197 GAAPKADLEETGRVLSIGDGIARVY 271
GA P+ EET ++ + I R Y
Sbjct: 78 GACPQCSPEETRQIKKVLSHIQRTY 102
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.0 bits (42), Expect = 9.6
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = -3
Query: 365 PHPHCQVPS*GPFP*GLRRTPPSPQPGCSSS 273
PH Q P G P + PP PG S
Sbjct: 27 PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPS 57
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,225
Number of Sequences: 438
Number of extensions: 4110
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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