Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15f16f
         (580 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    29   0.65 
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.5  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    27   2.6  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    26   4.6  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   6.1  
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    25   6.1  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.0  

>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +1

Query: 52  FVLFIAAAVSADDEPVLARLLVSKQVLNK 138
           F+LFI+ A+S    PVLAR+L    +L+K
Sbjct: 159 FLLFISTAMSITAFPVLARILSELHLLHK 187


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -3

Query: 185 LNNVYFTSISIFSTKYLFSTCF 120
           LN+  FTS+S+ S+KY F T F
Sbjct: 156 LNDACFTSLSMKSSKYSFLTAF 177


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 181 FNVGSAPAVEVKLVDNGFHPDV 246
           FNVG +  V V L D  FH DV
Sbjct: 86  FNVGISVIVRVTLKDGSFHEDV 107


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
            E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 313  HVVTVRSNKYGYFNFS-SAEVTYKASEDATDVQYSISSAPGEGAIVAF-KDYDRKFSSHI 486
            H   +R ++   FN++     TY ASE+  +++Y      G G  + F     ++F+ + 
Sbjct: 1274 HRQKIRISRKKIFNYALHLLATYAASENILEIEYEDEVGSGLGPTLEFYTSVSKEFTLNS 1333

Query: 487  LD 492
            LD
Sbjct: 1334 LD 1335


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 329 GPISTAISTSARRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSSI 493
           G +ST  S++A++    KP K+   +   ++  +E E    SK+ +     TS I
Sbjct: 257 GSLSTNTSSTAQKNKSRKPTKSFSDAVAAASRAKELEKEKLSKVTVTPDDSTSII 311


>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 347 ISTSARRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKI 460
           +    +RK  TK     +  +I SAVL E +P   SK+
Sbjct: 132 VGKEVQRKLRTKQLDLSKAESIISAVLGEEKPDPSSKV 169


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 338 STAISTSAR-RKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSS 490
           STA++TS     S    + TP TS   S++L    P   S ++  S+P TSS
Sbjct: 735 STALNTSTPITSSSVLNSSTPITS---SSILNSSTPITSSSVLNSSTPITSS 783



 Score = 25.0 bits (52), Expect = 8.0
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 338  STAISTSAR-RKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSS 490
            STA++TS     S    + TP TS   S VL    P   S ++  S+P TSS
Sbjct: 1071 STALNTSTPITSSSVLNSSTPITS---STVLNSSTPITSSSVLNSSTPITSS 1119



 Score = 25.0 bits (52), Expect = 8.0
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +2

Query: 338  STAISTSAR-RKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSS 490
            STA++TS     S    + TP TS   S+VL    P   S ++  S+P TSS
Sbjct: 1971 STALNTSTPITSSSVLNSSTPITS---SSVLNTSTPITSSSVLNSSTPITSS 2019



 Score = 25.0 bits (52), Expect = 8.0
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = +2

Query: 338  STAISTSARRKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSS 490
            ST ++TS    S T  A    TS   S+VL    P   S ++  S+P TSS
Sbjct: 2355 STVVNTSTPITSST--ALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSS 2403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,394,184
Number of Sequences: 5004
Number of extensions: 46641
Number of successful extensions: 219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)