Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15f16f
(580 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0020 + 147147-147313,148450-148548,148634-148742,148856-14... 57 9e-09
05_01_0021 - 148084-148191,148387-148488,148641-148727,148845-14... 47 9e-06
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 30 1.2
05_05_0266 - 23694466-23696787,23696885-23697187 29 2.0
01_06_1133 + 34781799-34782071,34782168-34783166,34783252-347836... 29 2.7
04_03_0521 + 16765347-16767324,16769202-16769392 29 3.5
01_01_0033 + 260562-260661,260895-260941,261582-261681,261925-26... 29 3.5
05_04_0181 + 18799445-18799593,18801112-18801163,18801964-188019... 28 4.7
08_02_1080 - 24197514-24199415 27 8.2
04_01_0596 - 7852529-7855185,7855545-7855581 27 8.2
04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019 27 8.2
02_01_0397 - 2877242-2878479,2878557-2878861,2879862-2880549,288... 27 8.2
01_05_0406 + 21875376-21875451,21875570-21875610,21876245-218763... 27 8.2
>01_01_0020 +
147147-147313,148450-148548,148634-148742,148856-148927,
149056-149061,150811-150915,151048-151539,151629-152025,
152178-153646,154010-154450,154543-155214
Length = 1342
Score = 57.2 bits (132), Expect = 9e-09
Identities = 41/148 (27%), Positives = 71/148 (47%)
Frame = +1
Query: 31 MAAKLLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVE 210
MA +L +L AAA ++ D P L K VE + V L+N GSA A +
Sbjct: 3 MARSILLLLLLAAAASASADAPFLVAHKKVSLSRPKPGVERL--AVSLDLYNQGSATAYD 60
Query: 211 VKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASE 390
V + D+ + + F +V G+++ ++R+ P SH + + G F S A +TY+
Sbjct: 61 VSINDDTWPKEAFELVSGEMSKTLERLDPGVTASHAFVLETKVQGRFQGSPAVITYRVPT 120
Query: 391 DATDVQYSISSAPGEGAIVAFKDYDRKF 474
A +Q + S+ ++A + ++KF
Sbjct: 121 KAA-LQEAYSTPILALDVLAERPPEKKF 147
>05_01_0021 -
148084-148191,148387-148488,148641-148727,148845-148979,
149109-149324,149772-150043,151346-151394,151521-151526,
151657-151728,152077-152185,152272-152370,153186-153364
Length = 477
Score = 47.2 bits (107), Expect = 9e-06
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 1/145 (0%)
Frame = +1
Query: 43 LLYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 222
LL +L AA + D P + + K L++ + V L+N GSA A +V L
Sbjct: 11 LLLLLLVPFAAAAGQDAPFV--VAQKKVALSRPGPGVERLAVTLNLYNQGSATAYDVSLN 68
Query: 223 DNGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKA-SEDAT 399
D+ + + F ++ G + ++++ P SH + + G F S A +TY+ ++ A
Sbjct: 69 DDSWPQEAFQLISGTTSKIVEKLDPGATASHNFILETKVQGKFQGSPAIITYRVPTKAAL 128
Query: 400 DVQYSISSAPGEGAIVAFKDYDRKF 474
YS P + I+A + +KF
Sbjct: 129 QEAYSTPMFPLD--ILAERPPQQKF 151
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 30.3 bits (65), Expect = 1.2
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Frame = +1
Query: 358 SSAEVTYKASEDATDVQYSISSAPGEGAIVAF--KDYD---RKFSSHILDWAAFAVMTLP 522
SS + +D+++ S E A+V F KD D R + +L+W + +V
Sbjct: 3151 SSDSKKKRKGDDSSEGSSEKSCMDMEQAVVVFTGKDGDVLKRFVDTFLLEWNSTSVRH-E 3209
Query: 523 SLAIPFGLWYSSKSKYEK 576
+ ++ FGLWY +KS +++
Sbjct: 3210 AKSVLFGLWYHAKSSFKE 3227
>05_05_0266 - 23694466-23696787,23696885-23697187
Length = 874
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 52 FVLFIAAAVSADDEPVLARLLVSKQVLNKYL 144
F+LF+ A+S PVLAR+L ++LN L
Sbjct: 196 FLLFLGVALSVTAFPVLARILAEVKLLNSDL 226
>01_06_1133 +
34781799-34782071,34782168-34783166,34783252-34783663,
34783727-34784670
Length = 875
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +1
Query: 52 FVLFIAAAVSADDEPVLARLLVSKQVLNKYL 144
F+LF+ A+S PVLAR+L ++LN L
Sbjct: 186 FLLFLGVALSVTAFPVLARILAEIKLLNTEL 216
>04_03_0521 + 16765347-16767324,16769202-16769392
Length = 722
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 112 LVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVDNGFHPDVFT 252
++ + VL K L+ N I + + A ++ K+VD+G PD+FT
Sbjct: 74 MMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFT 120
>01_01_0033 +
260562-260661,260895-260941,261582-261681,261925-262181,
262525-262640,263014-263098,264236-264415,264740-264817,
264909-264970,265138-265246,266237-266514,266591-266657,
266734-266802,266880-266981,267309-267443
Length = 594
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 43 LLYFVLFIAAAVSADDEPVLARLLVSKQVLNK 138
+ +++L A +S D PV+ARL+ K V+ K
Sbjct: 264 ITFYLLMKAEGLSVQDHPVIARLVEIKSVVEK 295
>05_04_0181 +
18799445-18799593,18801112-18801163,18801964-18801999,
18802098-18802233,18802313-18802512
Length = 190
Score = 28.3 bits (60), Expect = 4.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 259 GGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTY 378
GG TA+ + Q + +T + YGY NFS EV +
Sbjct: 150 GGSSTAQHEIGPSQLDEPPPITQPTQDYGYINFSGVEVAH 189
>08_02_1080 - 24197514-24199415
Length = 633
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 338 STAISTSARRKSHTKPAKTPQTSNIRS 418
S +S S RRKSH+ AK TS I S
Sbjct: 539 SNELSFSGRRKSHSGVAKNKVTSKINS 565
>04_01_0596 - 7852529-7855185,7855545-7855581
Length = 897
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 478 SHILDWAAFAVMTLPSLAIPFGLWYSSKSK 567
SH+L W ++ LP P G W+ S ++
Sbjct: 5 SHMLRWIISMLLNLPKAVKPIGEWFLSGAR 34
>04_01_0449 + 5830017-5830272,5830376-5830620,5831994-5833019
Length = 508
Score = 27.5 bits (58), Expect = 8.2
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = +1
Query: 427 PGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWYSSKSKY 570
PG VAF D + ++ + V L LAIP+ W K+KY
Sbjct: 340 PGYFFTVAFVDRIGRVKIQLIGFTMMTVFML-CLAIPYDQWLRHKNKY 386
>02_01_0397 -
2877242-2878479,2878557-2878861,2879862-2880549,
2881998-2882016
Length = 749
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 380 KPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSSIGR 499
+P P T+N +S ++R+ PS++ I +S T+ I R
Sbjct: 96 EPTPEPNTANHQSPAKRQRKSDNPSRLPIVASSPTTEIPR 135
>01_05_0406 +
21875376-21875451,21875570-21875610,21876245-21876314,
21876410-21876558,21876671-21876766,21876863-21876933,
21877119-21877267,21877400-21877463,21877547-21877631,
21878079-21878139,21879005-21879144,21879266-21879559
Length = 431
Score = 27.5 bits (58), Expect = 8.2
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +2
Query: 326 SGPISTAISTSAR--RKSHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIE-SSPRTSSIG 496
SG + + +S+R + S +P+++ +T + Q P S M++ S PR SS G
Sbjct: 345 SGSLRRPVVSSSRELQSSEAEPSRS-RTPDASPGTFQRSAPPRRSSQMLDYSDPRHSSSG 403
Query: 497 RHS 505
RH+
Sbjct: 404 RHA 406
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,937,101
Number of Sequences: 37544
Number of extensions: 315554
Number of successful extensions: 925
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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