Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15f16f
(580 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41274-1|AAA82458.1| 188|Caenorhabditis elegans Hypothetical pr... 107 7e-24
Z68879-2|CAA93083.1| 182|Caenorhabditis elegans Hypothetical pr... 59 3e-09
AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical ... 29 2.4
Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical pr... 27 7.3
U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein. 27 7.3
AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated... 27 7.3
AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated... 27 7.3
AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated... 27 7.3
AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ... 27 9.6
>U41274-1|AAA82458.1| 188|Caenorhabditis elegans Hypothetical
protein T04G9.5 protein.
Length = 188
Score = 107 bits (256), Expect = 7e-24
Identities = 58/177 (32%), Positives = 102/177 (57%), Gaps = 2/177 (1%)
Frame = +1
Query: 46 LYFVLFIAAA-VSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLV 222
L+ +LF+ + V + A +L KQ L+ Y VENMD +++Y L+NVG PA +V +
Sbjct: 5 LFALLFVVVSCVDVGTQTRDAFILAHKQPLSTYAVENMDFVLEYGLYNVGDKPAQKVTID 64
Query: 223 D-NGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDAT 399
D + F + F +V G L ++I +NV+H V +R +G+FN+++A+VTY +
Sbjct: 65 DRHSFPTNSFDIVKGLLFVHFEQIPAGSNVTHSVVIRPRAFGFFNYTAAQVTYYTDNENH 124
Query: 400 DVQYSISSAPGEGAIVAFKDYDRKFSSHILDWAAFAVMTLPSLAIPFGLWYSSKSKY 570
V ++++ PGEG I ++YDR+F+ + F ++ P+ F L+ SK+++
Sbjct: 125 HV--TLTNTPGEGYIYRQREYDRRFAPKYTYFLVFFLIVAPTTLGSFLLFQQSKARF 179
>Z68879-2|CAA93083.1| 182|Caenorhabditis elegans Hypothetical
protein K08F4.3 protein.
Length = 182
Score = 58.8 bits (136), Expect = 3e-09
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 3/178 (1%)
Frame = +1
Query: 46 LYFVLFIAAAVSADDEPVLARLLVSKQVLNKYLVENMDILVKYTLFNVGSAPAVEVKLVD 225
+ V I +A++A D A++L+ K + KY V + +Y + N+G +PA++V+L D
Sbjct: 1 MQLVFLILSALAAADAS--AKILIGKSFVTKYPVAQRENAFEYQIINIGLSPALKVELSD 58
Query: 226 -NGFHPDVFTVVGGQLTAEIDRIAPQTNVSHVVTVRSNKYGYFNFSSAEVTYKASEDATD 402
F D F ++ G TA I + + H + V V Y SE
Sbjct: 59 LKSFPTDRFEILKGSATASFPVIPANSTIYHHIVVIPRVPQAIEDHDVTVNYTDSETGKR 118
Query: 403 VQYSISSAPGEGAIVAFKDYD-RKFSS-HILDWAAFAVMTLPSLAIPFGLWYSSKSKY 570
+ S S G F + RK + + F + P AIP L++ SK +Y
Sbjct: 119 ARTSTVSYDKRGYTHFFAETAMRKVEGVNCTHFLGFGAIAFPLTAIPAILYWISKRRY 176
>AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical
protein C48E7.8 protein.
Length = 820
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +1
Query: 193 SAPAVEVKLVDNGFHPDVFTVVGGQLTAEIDRIAPQTNVSH 315
S A+ V L NG++ VF V GGQ + R++ +SH
Sbjct: 633 SGLAILVVLAQNGYNFGVFKVFGGQTLVVLSRLSFGVYLSH 673
>Z81560-7|CAB76737.2| 188|Caenorhabditis elegans Hypothetical
protein K02E2.8a protein.
Length = 188
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 296 GAILSISAVSCPPTTVNTSGWKPLSTSFTST 204
G I + + +S P TTV + P+ST+ T+T
Sbjct: 26 GTITTTTTISAPTTTVPITTTNPVSTTTTTT 56
>U33058-1|AAB00542.1| 6632|Caenorhabditis elegans UNC-89 protein.
Length = 6632
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 371 SHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSSIG 496
S TK K+P ++S +E+ PS P+K S T G
Sbjct: 1414 SPTKKEKSPAAEEVKSPTKKEKSPSSPTKKEKSPSSPTKKTG 1455
>AF003131-4|AAB54132.2| 6632|Caenorhabditis elegans Uncoordinated
protein 89, isoform a protein.
Length = 6632
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 371 SHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSSIG 496
S TK K+P ++S +E+ PS P+K S T G
Sbjct: 1414 SPTKKEKSPAAEEVKSPTKKEKSPSSPTKKEKSPSSPTKKTG 1455
>AF003131-3|AAV34801.1| 7122|Caenorhabditis elegans Uncoordinated
protein 89, isoform g protein.
Length = 7122
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 371 SHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSSIG 496
S TK K+P ++S +E+ PS P+K S T G
Sbjct: 1414 SPTKKEKSPAAEEVKSPTKKEKSPSSPTKKEKSPSSPTKKTG 1455
>AF003131-1|AAP68958.1| 8081|Caenorhabditis elegans Uncoordinated
protein 89, isoform b protein.
Length = 8081
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 371 SHTKPAKTPQTSNIRSAVLQEREPS*PSKIMIESSPRTSSIG 496
S TK K+P ++S +E+ PS P+K S T G
Sbjct: 1414 SPTKKEKSPAAEEVKSPTKKEKSPSSPTKKEKSPSSPTKKTG 1455
>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
protein Y37B11A.2 protein.
Length = 1133
Score = 27.1 bits (57), Expect = 9.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 446 TMAPSPGALLIEYWTSVASSLAL 378
T+AP G LL+ W V S LAL
Sbjct: 478 TVAPPKGRLLVSVWKVVRSDLAL 500
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,404,202
Number of Sequences: 27780
Number of extensions: 269350
Number of successful extensions: 813
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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