Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15f13f
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    33   0.041
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces...    27   2.0  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   2.0  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   3.5  
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc...    25   8.2  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   8.2  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   8.2  

>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 32.7 bits (71), Expect = 0.041
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +2

Query: 164 WDDIAAECERFLGPRGFGGIQVSPPNENLVIWSRNRPWWERYQPISY-RLVTRSGNENQF 340
           W  I    + ++   GF  I +SP  E L     +   +  ++P +Y RL    GNE   
Sbjct: 64  WQGIVDHLD-YIRDLGFTAISISPVVEQLEGPEYHGEAYHGHRPKNYYRLNPHFGNEEDL 122

Query: 341 SNMVRRCNNVGVRIYVDAIINHMTGTWNEN 430
             +    +  G+ + VD  INH    + E+
Sbjct: 123 KELSDALHGKGMYLMVDVAINHTISEYFED 152


>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 233 PPNENLVIWSRNRPWWERYQPISYRL 310
           PP   L IWS+   W +   P  YRL
Sbjct: 170 PPKHPLSIWSQLYDWIDSQNPSQYRL 195


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 296 ISYRLVTRSGNENQFSNMVRRCNNVGVRIYVDAIINH 406
           +S+ + T+   +  F+N+ R C+N+ V + V    N+
Sbjct: 177 LSFSIYTKENEDALFNNVFRPCSNIIVSVLVFIFTNY 213


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -1

Query: 143 PWWCDPMHSEGFYRPTPESRPKVEGCTETSLS 48
           P + DP+H  GF+R  P S  +    TE SLS
Sbjct: 139 PIYRDPVHDFGFFRYDPSS-IRFHDVTEISLS 169


>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1106

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
 Frame = +2

Query: 263 RNRPWWERYQPISYRLVTRSGNENQFSNMVRRCNNVGVRIYVDAI---INHMTGTWNENV 433
           RN PWW+ +   + +  T  G  +    M     ++ VR YV+ I   +N    +    V
Sbjct: 722 RNAPWWKSF--FTGKKPTMGGIPHDKYGM----TSLSVRCYVEGIYKKLNITDPSKLTKV 775

Query: 434 GTGGSTADFGN 466
            TGG   D G+
Sbjct: 776 QTGGPDGDLGS 786


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 185 CERFLGPRGFG-GIQVSPPNENL 250
           C RFLG RGF  GI+   P ++L
Sbjct: 681 CARFLGNRGFSIGIEDVQPGKSL 703


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 434 GTGGSTADFGNWHYPAVPYGRNDFNW 511
           GT  +  D+G + +  V YG    NW
Sbjct: 91  GTFAAILDYGTYKFALVRYGSKTANW 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,759,985
Number of Sequences: 5004
Number of extensions: 64663
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)