Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15f11r
         (940 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   3.8  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   3.8  
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    26   6.7  
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    26   6.7  

>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 691 VYSNTAHST*VDINNKLFYHFKTFEISNSLSLS 789
           +++   + T V I  K  YH+  F+  N LSLS
Sbjct: 322 IFNVAGYQTSVPIYAKALYHYNPFQSGNFLSLS 354


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 745 YHFKTFEISNSLSLSCHIP 801
           YH+  F++SN  S SC+ P
Sbjct: 217 YHYTDFQLSNGSSYSCNAP 235


>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 254  NFAIFIQYKYSNKMYYRFFLVSLYYGIVFLIYINYLSTLKSC--FV-NMNFLHFKGSNGM 424
            N  ++I +K      +RF   S  YG+ +  +I+YLS    C  F  N++   +KG + +
Sbjct: 859  NEKLYINHKAPGADLFRF---SFDYGLHWSEWIDYLSNKTECTEFANNISLKTWKGHHVI 915

Query: 425  KQSWHDL 445
             Q W  L
Sbjct: 916  VQYWSRL 922


>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +2

Query: 254 NFAIFIQYKYSNKMYYRFFLVSLYYGIVFLIYINYLSTLKSC 379
           +F  +I +   +  YY F  V  Y  I    YI+Y  +  SC
Sbjct: 375 SFLFYITFYCWDNYYYSFLQVVHYTSITAAGYISYTYSFTSC 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,536
Number of Sequences: 5004
Number of extensions: 67810
Number of successful extensions: 160
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 477327454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)