Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15f11f
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch...    29   0.72 
SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    29   0.72 
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces...    27   2.2  
SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|ch...    27   2.2  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   2.2  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    25   6.7  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   6.7  

>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 24/116 (20%), Positives = 54/116 (46%), Gaps = 1/116 (0%)
 Frame = +3

Query: 24  LFISIPNSCTAMLNLSRLCRCKQSLSAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNI 203
           +F  +P +C +++ LS++       S++    L+++      S ++         HRY++
Sbjct: 283 IFNVLPTTCKSLVVLSQVRSTAVGTSSIYYSFLLATLLSTKPSALA------ISEHRYSL 336

Query: 204 LGRFSLSSTIKSNSIIMRFCSSTPKP-KTSRAVGYWLLGCSGMVFTAVVLGMVSGY 368
           +   +LSS   +    ++  ++TPK     +++  W       V  ++VL +VS Y
Sbjct: 337 VESVTLSSLFDALHETLQLKAATPKAVHVDKSINVW----ESDVGDSLVLSLVSAY 388


>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 288 SRAVGYWLLGCSGMVFTAVVLGMVS 362
           S+ V +WLLG S +V   VV+G ++
Sbjct: 95  SKKVAFWLLGSSALVLAIVVVGGIT 119


>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 609 VYSNTAHST*VDINNKLFYHFKTFEISNSLSLS 511
           +++   + T V I  K  YH+  F+  N LSLS
Sbjct: 322 IFNVAGYQTSVPIYAKALYHYNPFQSGNFLSLS 354


>SPAC3H1.05 |||CAAX prenyl protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 18  FCLFISIPNSCTAMLNLSRLCRCKQSLSAVQSKLLVSSRNGFSNSIISRQIITTTK 185
           F L  SI +SC  M  L+   R  Q    + S  ++  + GF+ S +   +I   K
Sbjct: 148 FSLSTSITHSCVFMFGLTLFSRLIQIPFNLYSTFVIEEKYGFNKSTLKIFVIDLLK 203


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 555 YHFKTFEISNSLSLSCHIP 499
           YH+  F++SN  S SC+ P
Sbjct: 217 YHYTDFQLSNGSSYSCNAP 235


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
 Frame = +3

Query: 33  SIPNSCTAMLNLSRLCRCKQSL--SAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNIL 206
           S+ +S T   +L+       SL  S++ S  L SS    S+S+ S    +TT     +  
Sbjct: 118 SLASSSTTSSSLASSSITSSSLASSSITSSSLASSSTT-SSSLASSSTNSTTSATPTSSA 176

Query: 207 GRFSLSSTIKSNSIIMRFCSSTPKPKTSRA 296
              SLSST  SNS      +S+    T+ A
Sbjct: 177 TSSSLSSTAASNSATSSSLASSSLNSTTSA 206


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 93  SLSAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNILGRFSLSSTIKSNSIIM 254
           ++SA  ++  V   N  S  ++SRQ ITT   +  +     S +S I   SI++
Sbjct: 232 AISANSNEPGVIGPNSLSRELVSRQTITTLTDYMTDSKAPHSATSLINGVSIVI 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,287
Number of Sequences: 5004
Number of extensions: 43181
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)