Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15f11f
         (622 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754...    36   0.034
11_04_0284 + 15770208-15770409,15770915-15771146,15771550-157717...    28   5.2  

>08_02_1123 +
           24474434-24474538,24474800-24474860,24475050-24475477,
           24475915-24476231,24476991-24477216,24477302-24477547,
           24477635-24477745,24478051-24478182,24478297-24478325,
           24478352-24478502
          Length = 601

 Score = 35.5 bits (78), Expect = 0.034
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 270 TPKPKTSRAVGYWLLGCSGMVFTAVVLGMVS 362
           T  P+  +A+G WL GC+  VF  V+LG V+
Sbjct: 233 TKGPQAQKAIGIWLFGCATWVFGLVILGGVT 263


>11_04_0284 +
           15770208-15770409,15770915-15771146,15771550-15771743,
           15771858-15771991,15772204-15772435,15772487-15772682,
           15774964-15775002,15775969-15775987,15776131-15776274
          Length = 463

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +3

Query: 204 LGRFSLSSTIKSNSIIMRFCSSTPKPKTSRAVGYWLLGCSGMVFTAVVLGMVS 362
           L    +S+ + S SII+ F     KPK    +  W L C+G V   VV+  VS
Sbjct: 334 LRNVGISAFMNSKSIIVIF----EKPKDEMFMQKWQLACAGNVAHVVVMPHVS 382


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,488,013
Number of Sequences: 37544
Number of extensions: 226617
Number of successful extensions: 506
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)