Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15f11f
(622 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49130-3|CAA88968.1| 395|Caenorhabditis elegans Hypothetical pr... 37 0.013
Z73899-9|CAA98072.2| 905|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z11576-1|CAA77663.1| 625|Caenorhabditis elegans aromatic-L-amin... 30 1.2
U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical pr... 29 2.0
AL132902-5|CAB81990.1| 289|Caenorhabditis elegans Hypothetical ... 28 6.2
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor... 28 6.2
Z70757-2|CAA94798.1| 611|Caenorhabditis elegans Hypothetical pr... 27 8.2
U00056-1|AAN65308.2| 476|Caenorhabditis elegans Hypothetical pr... 27 8.2
DQ178244-1|ABA18183.1| 521|Caenorhabditis elegans putative sulf... 27 8.2
AY954525-1|AAX34433.1| 611|Caenorhabditis elegans anion transpo... 27 8.2
AY887917-1|AAX34429.1| 611|Caenorhabditis elegans anion transpo... 27 8.2
>Z49130-3|CAA88968.1| 395|Caenorhabditis elegans Hypothetical
protein T06D8.5 protein.
Length = 395
Score = 36.7 bits (81), Expect = 0.013
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +3
Query: 282 KTSRAVGYWLLGCSGMVFTAVVLGMVS 362
K+ + +G+WL+GC+GM + AV LG V+
Sbjct: 46 KSRKRIGWWLMGCAGMCYGAVALGGVT 72
>Z73899-9|CAA98072.2| 905|Caenorhabditis elegans Hypothetical
protein ZK829.2 protein.
Length = 905
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 159 SRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 278
S + ++R N G SL+S + N ++R C ++PK
Sbjct: 747 SNDMFNKALLYRCNETGNVSLASCVLQNKFVIRMCINSPK 786
>Z11576-1|CAA77663.1| 625|Caenorhabditis elegans aromatic-L-amino
acid decarboxylaseprotein.
Length = 625
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 159 SRQIITTTKMHRYNILGRFSLSSTIKSNSIIMRFCSSTPK 278
S + ++R N G SL+S + N ++R C ++PK
Sbjct: 467 SNDMFNKALLYRCNETGNVSLASCVLQNKFVIRMCINSPK 506
>U41273-2|AAA82454.2| 306|Caenorhabditis elegans Hypothetical
protein C26B9.6 protein.
Length = 306
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +3
Query: 501 VYGMTSLNYLKSQKF*NDKKVCYLC-----LPTYYEQC 599
V G + Y+K + F D +CY+C +PT E C
Sbjct: 86 VLGCAGVPYMKKEGFQQDHDICYICYYKLTIPTRIENC 123
>AL132902-5|CAB81990.1| 289|Caenorhabditis elegans Hypothetical
protein Y71A12B.5 protein.
Length = 289
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 299 WILATRMQWYGLHCCSTRYGIWI 367
++ AT W GL T YG+WI
Sbjct: 173 FVAATAQPWLGLQSNFTTYGVWI 195
>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
abnormality protein1, isoform h protein.
Length = 2006
Score = 27.9 bits (59), Expect = 6.2
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Frame = +3
Query: 99 SAVQSKLLVSSRNGFSNSIISRQIITTTKMHRYNILGRFSLSSTIKSN-SIIMRFCSSTP 275
S + K + GF N I ++ TTK R + F + N S + S T
Sbjct: 737 SELPEKFPPAHEQGFVNFAIKSEVTATTKFDRLKYMAEFRKLLALPDNFSTTPKQSSPTS 796
Query: 276 KPKTSR 293
P T+R
Sbjct: 797 SPTTTR 802
>Z70757-2|CAA94798.1| 611|Caenorhabditis elegans Hypothetical
protein ZK287.2 protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 306 WLLGCSGMVFTAVVLGMVSGYIIMLYSI 389
WL+ C +FT V G+V LY++
Sbjct: 441 WLVACLSTIFTDVTTGLVISLAFSLYTL 468
>U00056-1|AAN65308.2| 476|Caenorhabditis elegans Hypothetical
protein R05H11.1 protein.
Length = 476
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +2
Query: 152 YYFKAN-YHNYKNAQI*HPRKVQSKQHNKIKQ-YYNAIL 262
YY K++ + NY + HP++V+S Q + I Q Y N +L
Sbjct: 107 YYLKSSKFQNYMFCKRSHPKEVKSLQPSTIPQNYINGML 145
>DQ178244-1|ABA18183.1| 521|Caenorhabditis elegans putative sulfate
transporter prestinprotein.
Length = 521
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 306 WLLGCSGMVFTAVVLGMVSGYIIMLYSI 389
WL+ C +FT V G+V LY++
Sbjct: 351 WLVACLSTIFTDVTTGLVISLAFSLYTL 378
>AY954525-1|AAX34433.1| 611|Caenorhabditis elegans anion
transporter SULP-8a protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 306 WLLGCSGMVFTAVVLGMVSGYIIMLYSI 389
WL+ C +FT V G+V LY++
Sbjct: 441 WLVACLSTIFTDVTTGLVISLAFSLYTL 468
>AY887917-1|AAX34429.1| 611|Caenorhabditis elegans anion
transporter SULP-8b protein.
Length = 611
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 306 WLLGCSGMVFTAVVLGMVSGYIIMLYSI 389
WL+ C +FT V G+V LY++
Sbjct: 441 WLVACLSTIFTDVTTGLVISLAFSLYTL 468
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,604,576
Number of Sequences: 27780
Number of extensions: 233102
Number of successful extensions: 695
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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