Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15f11f
(622 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 26 0.34
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 25 0.79
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 24 1.0
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 24 1.4
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 23 1.8
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 23 1.8
DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex det... 23 2.4
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 23 3.2
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 4.2
DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex det... 22 4.2
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 22 5.5
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 22 5.5
DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex det... 22 5.5
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 7.3
DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex det... 21 7.3
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 7.3
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 7.3
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 21 9.7
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 25.8 bits (54), Expect = 0.34
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 264 SSTPKPKTSRAVGYWLLGCSGMVFTAVV 347
+S PK +A W LGC+ +F A+V
Sbjct: 283 NSLPKVSYIKASEIWFLGCTIFLFAAMV 310
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 24.6 bits (51), Expect = 0.79
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = -1
Query: 505 YTRHFHNSRYYTNAHKDGTKQLYYLLPWL 419
Y +++N Y N + + K+LYY + ++
Sbjct: 330 YNNNYNNYNNYNNNYNNNYKKLYYNINYI 358
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 24.2 bits (50), Expect = 1.0
Identities = 7/19 (36%), Positives = 13/19 (68%)
Frame = +3
Query: 264 SSTPKPKTSRAVGYWLLGC 320
S+ P+P + A+G+W + C
Sbjct: 371 SAIPEPSKNPAMGHWQMSC 389
Score = 21.0 bits (42), Expect = 9.7
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -1
Query: 316 PSSQYPTALDVF 281
P YPTALD F
Sbjct: 268 PKVPYPTALDFF 279
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 23.8 bits (49), Expect = 1.4
Identities = 8/24 (33%), Positives = 14/24 (58%)
Frame = -1
Query: 505 YTRHFHNSRYYTNAHKDGTKQLYY 434
Y + +N+ Y N + + K+LYY
Sbjct: 333 YNNNNYNNNNYNNNYNNNCKKLYY 356
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 23.4 bits (48), Expect = 1.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 353 YGIWIYYNALQYLLY 397
YGIW+Y+ L ++Y
Sbjct: 220 YGIWVYFVPLFLIIY 234
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 23.4 bits (48), Expect = 1.8
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 353 YGIWIYYNALQYLLY 397
YGIW+Y+ L ++Y
Sbjct: 96 YGIWVYFVPLFLIIY 110
>DQ325077-1|ABD14091.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 23.0 bits (47), Expect = 2.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -1
Query: 490 HNSRYYTNAHKDGTKQLYYLLPWL 419
HN+ Y N + + K+LYY + ++
Sbjct: 91 HNNNNYNNNNYNNYKKLYYNINYI 114
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 22.6 bits (46), Expect = 3.2
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 267 STPKPKTSRAVGYWLLGCSGMVFTAVV-LGMVSGYI 371
S P +A+ W+ CS VF +++ +V+ Y+
Sbjct: 266 SLPPVSYVKAIDVWMSSCSVFVFLSLMEFAVVNNYM 301
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +3
Query: 264 SSTPKPKTSRAVGYWLLGCSGMVFTAV 344
S P +A+ W+ GC VF A+
Sbjct: 251 SDIPPVAYVKALDVWMAGCMMFVFAAL 277
>DQ325103-1|ABD14117.1| 182|Apis mellifera complementary sex
determiner protein.
Length = 182
Score = 22.2 bits (45), Expect = 4.2
Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = -1
Query: 520 KLVMPYTRHFHNSRY--YTNAHKDGTKQLYYLLPWL 419
K++ + +++ S Y Y N + + K+LYY + ++
Sbjct: 80 KIISSLSNNYNYSNYNNYNNNYNNYNKKLYYNINYI 115
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 564 KLFYHFKTFEI 532
KLFYH K F+I
Sbjct: 113 KLFYHAKDFDI 123
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 564 KLFYHFKTFEI 532
KLFYH K F+I
Sbjct: 113 KLFYHAKDFDI 123
>DQ325076-1|ABD14090.1| 191|Apis mellifera complementary sex
determiner protein.
Length = 191
Score = 21.8 bits (44), Expect = 5.5
Identities = 8/29 (27%), Positives = 17/29 (58%)
Frame = -1
Query: 505 YTRHFHNSRYYTNAHKDGTKQLYYLLPWL 419
Y + +N+ Y N + + K+LYY + ++
Sbjct: 96 YNNNNYNNYNYNNNNYNNYKKLYYNINYI 124
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 562 FVIYVYLRTMSSVRVH 609
F+I Y R +SS+R H
Sbjct: 235 FIILFYSRLLSSIRNH 250
>DQ325133-1|ABD14147.1| 181|Apis mellifera complementary sex
determiner protein.
Length = 181
Score = 21.4 bits (43), Expect = 7.3
Identities = 7/30 (23%), Positives = 17/30 (56%)
Frame = -1
Query: 508 PYTRHFHNSRYYTNAHKDGTKQLYYLLPWL 419
P + +++ + Y N +K +LYY + ++
Sbjct: 87 PLSNNYNYNNNYNNYNKHNYNKLYYNINYI 116
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 7.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +1
Query: 562 FVIYVYLRTMSSVRVH 609
F+I Y R +SS+R H
Sbjct: 235 FIILFYSRLLSSIRNH 250
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.4 bits (43), Expect = 7.3
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 195 YNILGRFSLSSTIKSNSIIMRFCSSTPKPKTSRAVGYWLLGC 320
Y ++G SS ++ S++P+P +S A L GC
Sbjct: 816 YLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLSGC 857
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.0 bits (42), Expect = 9.7
Identities = 7/24 (29%), Positives = 14/24 (58%)
Frame = -1
Query: 490 HNSRYYTNAHKDGTKQLYYLLPWL 419
HN+ Y + + K+LYY + ++
Sbjct: 91 HNNNNYKYNYNNNCKKLYYNINYI 114
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,303
Number of Sequences: 438
Number of extensions: 3333
Number of successful extensions: 20
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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