Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15f06r
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 28 2.1
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 27 2.8
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce... 27 4.9
SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 8.5
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb... 26 8.5
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 27.9 bits (59), Expect = 2.1
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +2
Query: 101 YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 262
Y+ + +++T+T TG T P +DIV + G++GT T+T+
Sbjct: 848 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 906
Query: 263 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 376
TS +V+ + +T + V TG G+ +T
Sbjct: 907 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 943
Score = 27.9 bits (59), Expect = 2.1
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +2
Query: 101 YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 262
Y+ + +++T+T TG T P +DIV + G++GT T+T+
Sbjct: 892 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 950
Query: 263 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 376
TS +V+ + +T + V TG G+ +T
Sbjct: 951 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 987
Score = 27.9 bits (59), Expect = 2.1
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +2
Query: 101 YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 262
Y+ + +++T+T TG T P +DIV + G++GT T+T+
Sbjct: 936 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 994
Query: 263 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 376
TS +V+ + +T + V TG G+ +T
Sbjct: 995 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1031
Score = 27.9 bits (59), Expect = 2.1
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +2
Query: 101 YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 262
Y+ + +++T+T TG T P +DIV + G++GT T+T+
Sbjct: 980 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 1038
Query: 263 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 376
TS +V+ + +T + V TG G+ +T
Sbjct: 1039 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1075
Score = 27.9 bits (59), Expect = 2.1
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 7/99 (7%)
Frame = +2
Query: 101 YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTINPIVKDA 262
Y+ + +++T+T TG T P +DIV + G++GT T+T+
Sbjct: 1024 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTG- 1082
Query: 263 FLTSGDYNVIVVDWSSFSLSTYSTAVMAVTG-VGSSIAT 376
TS +V+ + +T + V TG G+ +T
Sbjct: 1083 --TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETST 1119
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Frame = +2
Query: 101 YSNAQRNSITLTEDHFPTGNDTAA---PFN---NNSDIVVIIHGHSGTATTTI 241
Y+ + +++T+T TG T P +DIV + G++GT T+T+
Sbjct: 1068 YTGTETSTVTVTPTGTSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTV 1120
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 27.5 bits (58), Expect = 2.8
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +2
Query: 95 YYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFLTS 274
YY++ A SI ++ F +GN + + + I + + + T I PIV S
Sbjct: 94 YYFNPAGLYSIIISAREFASGNLLSLDQSRHFSIQATLSATTSGSGTIILPIVAGMGFVS 153
Query: 275 GDYNVIVVDWSSFSLSTYSTAV 340
G Y + ++S L + T +
Sbjct: 154 GYYTNLTPVFNSSILFSSITKI 175
>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 326
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 389 LKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGKFNV 508
LKL NK + +G N+G ++ R L + R K+N+
Sbjct: 113 LKLICNKSNELGKNVGWSTMSISARELAAGMLRYRNKYNL 152
>SPAP27G11.16 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 104
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 563 CYYLQLLKSSRIILMAKFFS 622
CY ++ LKS+RI++ + FS
Sbjct: 35 CYSIEKLKSNRILIAVRLFS 54
>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.8 bits (54), Expect = 8.5
Identities = 25/98 (25%), Positives = 43/98 (43%)
Frame = +2
Query: 197 VVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIAT 376
V+I HG G+ + K F D ++ +D S A ++ + +
Sbjct: 23 VLIFHGLLGSKRNWRSLAKK--FSCKLDRDIYAIDQRCHGDSP-CVAPLSYSAMALDAFQ 79
Query: 377 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARI 490
F+K+ KL +K I+G ++GA A VT KV ++
Sbjct: 80 FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKL 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,668,343
Number of Sequences: 5004
Number of extensions: 76530
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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