Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15f06r
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    33   0.42 
03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911...    31   1.7  
03_06_0035 - 31201115-31203646                                         29   5.1  
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533...    29   6.8  

>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 32.7 bits (71), Expect = 0.42
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = +2

Query: 251 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFN 430
           ++D    + D NV    +   +L   + A +A   +   IA +LKN KL ++++ +    
Sbjct: 379 MQDVLFLANDDNV--ARFFDSTLEHGADAKLAANWIMGDIAAYLKNEKLSIDEIKLTPLE 436

Query: 431 LGAHVAGVTGRNLEGKVAR 487
           L   +A +    + GK+ +
Sbjct: 437 LSELIASIRNGTISGKIGK 455


>03_02_0523 +
           9112577-9112608,9112626-9113251,9113696-9113747,
           9114713-9114782
          Length = 259

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
 Frame = +2

Query: 50  DAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTA 229
           D+I  +E    L    + S++  N+I+   D F +         ++ D+  + + H G  
Sbjct: 100 DSINGIESHKMLKVQAFSSSSSSNNIS--SDAFTSSRSNGTKDTDSWDMQHLEYDHPGLM 157

Query: 230 TTTINPIVKDAFLTSGDYNVIVV-DWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLN 406
               +  +++A+   G Y+V++  D +S  +   +  V+      + I   L  L    N
Sbjct: 158 LLPYDDDIEEAYDVLGQYDVVMKNDLASGDVDGSAAGVIDEKLYSNGIEDLL-ILPRGQN 216

Query: 407 KVHIVGFNLGAHV 445
            +H+V  N+  H+
Sbjct: 217 SIHVVYANIVCHL 229


>03_06_0035 - 31201115-31203646
          Length = 843

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
 Frame = +2

Query: 125 ITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFL-TSGD 280
           + + +DH+   N T A F+ ++D +V++H  S  AT   NP++++  + T GD
Sbjct: 125 LPIPDDHY---NLTTATFSVSTDDMVLLHDFSFIATPP-NPVLREYIVATQGD 173


>05_03_0376 -
           13252220-13252354,13252433-13252541,13253279-13253337,
           13253608-13253700,13254078-13254153,13254405-13254467,
           13254535-13254629,13254743-13254845,13254930-13255024,
           13255098-13255156,13255445-13255656,13256090-13256222,
           13256691-13257081
          Length = 540

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 44  TGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFP 151
           +  ++++  R   L+K +  SNA+   I +TED FP
Sbjct: 223 SSSSVKSSTRDEKLHKSFQISNAENEQILVTEDDFP 258


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,034,578
Number of Sequences: 37544
Number of extensions: 431933
Number of successful extensions: 978
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)