Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15f06f
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    26   3.6  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   4.7  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    26   4.7  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       25   6.2  
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ...    25   8.3  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    25   8.3  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   8.3  

>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 430 LKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARITGKFN 546
           LKL  NK + +G N+G     ++ R L   + R   K+N
Sbjct: 113 LKLICNKSNELGKNVGWSTMSISARELAAGMLRYRNKYN 151


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/77 (22%), Positives = 31/77 (40%)
 Frame = +1

Query: 133 YYYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIXVIIHGHSGTATTTINPIXKDAFLT 312
           YY          +  E HF    D    F +   + +    +   A++ + P+  +  +T
Sbjct: 650 YYPVFQPAPTEFSYPEKHFYFAVDNFNVFISKEVVRLFKTLYETIASSLVTPVTPNKLVT 709

Query: 313 SGDYNVIVVDWSSFSLS 363
           S   NV+ +   +FSLS
Sbjct: 710 SDYKNVLKIRTRTFSLS 726


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = +1

Query: 136 YYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIXVIIHGHSGTATTTINPIXKDAFLTS 315
           YY++ A   SI ++   F +GN  +   + +  I   +   +  + T I PI       S
Sbjct: 94  YYFNPAGLYSIIISAREFASGNLLSLDQSRHFSIQATLSATTSGSGTIILPIVAGMGFVS 153

Query: 316 GDYNVIVVDWSSFSLSTYSTAV 381
           G Y  +   ++S  L +  T +
Sbjct: 154 GYYTNLTPVFNSSILFSSITKI 175


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 166 SNFSVHCYSNNIYLNFQIAP 107
           +NF+  C   N +LNFQI P
Sbjct: 417 NNFTSTCAFENSHLNFQITP 436


>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
           repair protein Sfr1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 476 PRLKPTMCTLLSGNLRFFKKVAILDPTPVTAITAVEYVDKLNDDQ 342
           P+  P +  LLS  L+  K+V  L    +TA TA   V+  N+D+
Sbjct: 173 PKSDPEITQLLSRRLKLEKEVRNLQEQLITAETA-RKVEAKNEDK 216


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 418 FLKNLKLPLNKVHIVGFNLGAHVAGVTGRNLEGKVARI 531
           F+K+ KL  +K  I+G ++GA  A VT      KV ++
Sbjct: 80  FMKDHKL--DKASIIGHSMGAKTAMVTALKWPDKVEKL 115


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 154 QRNSITLTEDHFPTGNDTAAP 216
           + N I  TE+HFP   +  AP
Sbjct: 377 ETNQIPTTEEHFPATTEEVAP 397


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,260,055
Number of Sequences: 5004
Number of extensions: 45415
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)