Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15f06f
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267... 32 0.30
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533... 30 1.6
05_01_0493 + 4113869-4116728,4116859-4117370 30 1.6
06_02_0072 + 11152988-11153102,11153581-11153705,11153860-111540... 29 2.1
03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911... 29 2.1
10_05_0076 + 8872765-8872932,8874727-8874822,8875843-8875955,887... 28 4.8
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779... 27 8.5
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 27 8.5
03_06_0035 - 31201115-31203646 27 8.5
>11_06_0023 -
19325966-19326046,19326132-19326248,19326635-19326703,
19326922-19327119,19327388-19327591,19327688-19327828,
19328416-19328625,19329330-19329944
Length = 544
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/78 (23%), Positives = 36/78 (46%)
Frame = +1
Query: 295 KDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNL 474
+D + D NV + +L + A +A + IA +LKN KL ++++ + L
Sbjct: 380 QDVLFLANDDNV--ARFFDSTLEHGADAKLAANWIMGDIAAYLKNEKLSIDEIKLTPLEL 437
Query: 475 GAHVAGVTGRNLEGKVAR 528
+A + + GK+ +
Sbjct: 438 SELIASIRNGTISGKIGK 455
>05_03_0376 -
13252220-13252354,13252433-13252541,13253279-13253337,
13253608-13253700,13254078-13254153,13254405-13254467,
13254535-13254629,13254743-13254845,13254930-13255024,
13255098-13255156,13255445-13255656,13256090-13256222,
13256691-13257081
Length = 540
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 64 AIAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFP 192
A F + + ++++ R L+K + SNA+ I +TED FP
Sbjct: 216 AQGFDSQSSSSVKSSTRDEKLHKSFQISNAENEQILVTEDDFP 258
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +1
Query: 43 LKLITLLAIAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSI 168
LK +T LAI A +G L R G L Y Y NA SI
Sbjct: 244 LKNLTTLAIYTALLSGPIPPELGRCGCLENIYLYENALSGSI 285
>06_02_0072 +
11152988-11153102,11153581-11153705,11153860-11154004,
11154219-11154284,11154418-11154540,11154839-11154961,
11156065-11156193,11156510-11156632,11156737-11156838,
11156943-11157065,11157169-11157270,11157370-11157492,
11157791-11157913,11158209-11158331,11158633-11158761,
11160210-11161039
Length = 867
Score = 29.5 bits (63), Expect = 2.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -3
Query: 130 YLNFQIAPSFEWHLRCKRQMRWPT 59
Y++F + P W++ CK +M W T
Sbjct: 61 YIDFIVCPLAVWNIVCKERMNWAT 84
>03_02_0523 +
9112577-9112608,9112626-9113251,9113696-9113747,
9114713-9114782
Length = 259
Score = 29.5 bits (63), Expect = 2.1
Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 1/133 (0%)
Frame = +1
Query: 91 DAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIXVIIHGHSGTA 270
D+I +E L + S++ N+I+ D F + ++ D+ + + H G
Sbjct: 100 DSINGIESHKMLKVQAFSSSSSSNNIS--SDAFTSSRSNGTKDTDSWDMQHLEYDHPGLM 157
Query: 271 TTTINPIXKDAFLTSGDYNVIVV-DWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLN 447
+ ++A+ G Y+V++ D +S + + V+ + I L L N
Sbjct: 158 LLPYDDDIEEAYDVLGQYDVVMKNDLASGDVDGSAAGVIDEKLYSNGIEDLL-ILPRGQN 216
Query: 448 KVHIVGFNLGAHV 486
+H+V N+ H+
Sbjct: 217 SIHVVYANIVCHL 229
>10_05_0076 +
8872765-8872932,8874727-8874822,8875843-8875955,
8876078-8876144,8876246-8876338,8876496-8876648,
8876761-8876849,8876976-8877081,8877178-8877265,
8877375-8877493,8877626-8877787,8877917-8878113,
8878229-8878317,8878409-8878518,8878622-8878735,
8878990-8879097,8879182-8879784
Length = 824
Score = 28.3 bits (60), Expect = 4.8
Identities = 19/72 (26%), Positives = 28/72 (38%)
Frame = +1
Query: 109 ERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIXVIIHGHSGTATTTINP 288
++ GSL YY Y T + T D AP + ++ +GH + I
Sbjct: 285 QKRGSLQNYYMYHGGTNFGRTSGGPYITTSYDYDAPLDEYGNLRQPKYGHLKDLHSVIKS 344
Query: 289 IXKDAFLTSGDY 324
I K L G+Y
Sbjct: 345 IEK--ILVHGEY 354
>08_02_1170 +
24876197-24877070,24877563-24877606,24877805-24877900,
24877999-24878544
Length = 519
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -2
Query: 449 LLSGNLRFFKKVAILDPTPVTAITAVEYVDKLNDDQSTTITL 324
+LS LRF K L PV + + + +DD +TT+ L
Sbjct: 393 ILSNGLRFLKGAPTLVIVPVACVFSGIMTEFTSDDSTTTLVL 434
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 27.5 bits (58), Expect = 8.5
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = -1
Query: 231 RIIVKGRSSIVSSGKVVFGECNRISLCIAIVIIFI*TSKSLQVLNGISVASGKCDGQQSN 52
RIIV+ SS+V KVV G S I +I S S ++ + SG+CD Q +
Sbjct: 2038 RIIVELPSSMVRPLKVVRGTFQVTSKRINFIID---ESASESNMDDHASTSGQCDQQDKD 2094
Query: 51 QFQHFSRLHEM 19
+ S LH++
Sbjct: 2095 RSWLISSLHQI 2105
>03_06_0035 - 31201115-31203646
Length = 843
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +1
Query: 166 ITLTEDHFPTGNDTAAPFNNNSDIXVIIHGHSGTATTTINPIXKDAFL-TSGD 321
+ + +DH+ N T A F+ ++D V++H S AT NP+ ++ + T GD
Sbjct: 125 LPIPDDHY---NLTTATFSVSTDDMVLLHDFSFIATPP-NPVLREYIVATQGD 173
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,165
Number of Sequences: 37544
Number of extensions: 266696
Number of successful extensions: 710
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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