Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15f06f
         (591 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.7  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.0  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 307 LTSGDYNVIVVDWSSF 354
           + +GDY V+  +WSSF
Sbjct: 379 IQNGDYVVLETEWSSF 394


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 307 LTSGDYNVIVVDWSSF 354
           + +GDY V+  +WSSF
Sbjct: 85  IQNGDYVVLETEWSSF 100


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 285 VDRRRSSATV--TVYYYXNIRIIVKGR----SSIVSSGKVVFGEC 169
           ++R   SA V  T YY     + + G     SSI SSG V  GEC
Sbjct: 129 INRLNYSAFVNLTAYYDGGANLNLNGTVNCTSSIASSGVVSAGEC 173


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 57   FVGHRICRLQRRCHSKLGAIWKF 125
            F  HR+  ++RR   + G +W F
Sbjct: 983  FWHHRLAEIKRRPDLEYGKVWLF 1005


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 53  LLCWPSHLPLATEMPFK 103
           L+ W  H+P  T +P +
Sbjct: 245 LVAWAKHIPHFTSLPLE 261


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = +2

Query: 53  LLCWPSHLPLATEMPFK 103
           L+ W  H+P  T +P +
Sbjct: 245 LVAWAKHIPHFTSLPLE 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,620
Number of Sequences: 438
Number of extensions: 2996
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)