Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15f02f
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   2.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.7  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   5.7  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.5  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.9  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 321 WLNLLYLVFGHVKRNYSLGQLHAHIF 244
           WL L + +    K +YSL    A+IF
Sbjct: 7   WLILYFSIVCQAKAHYSLRDFKANIF 32


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 363 KGLG**RCNHITTCWLNLLYLV 298
           KG+G   C  + +CW N+ Y++
Sbjct: 98  KGIGYATC--VLSCWTNIYYII 117


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 363 KGLG**RCNHITTCWLNLLYLV 298
           KG+G   C  + +CW N+ Y++
Sbjct: 151 KGIGYATC--VLSCWTNIYYII 170


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +1

Query: 229 YPTLGEYMGMELSQAVIALNMPEYQ---IQQVQPTSSNVVAPLSS 354
           YPT+    G+   Q  I  N P Y+   I+++    S + A + S
Sbjct: 296 YPTMTYSNGLPFPQRPIWSNFPIYKYKYIREIMNKESRISAAIDS 340


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +1

Query: 229 YPTLGEYMGMELSQAVIALNMPEYQ---IQQVQPTSSNVVAPLSS 354
           YPT+    G+   Q  I  N P Y+   I+++    S + A + S
Sbjct: 296 YPTMTYSNGLPFPQRPIWSNFPIYKYKYIREIMNKESRISAAIDS 340


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 5/12 (41%), Positives = 10/12 (83%)
 Frame = -2

Query: 333 ITTCWLNLLYLV 298
           + +CW+N+ Y+V
Sbjct: 68  VMSCWMNVYYIV 79


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 306 YLVFGHVKRNYSLGQLH 256
           YL  GHV+  Y+  Q H
Sbjct: 785 YLCAGHVRLPYTFEQFH 801


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 306 YLVFGHVKRNYSLGQLH 256
           YL  GHV+  Y+  Q H
Sbjct: 823 YLCAGHVRLPYTFEQFH 839


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 268 QAVIALNMPEYQIQQVQ 318
           Q  IA   P Y++QQV+
Sbjct: 281 QTAIAFRTPTYRMQQVE 297


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 268 QAVIALNMPEYQIQQVQ 318
           Q  IA   P Y++QQV+
Sbjct: 281 QTAIAFRTPTYRMQQVE 297


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 412 CKDRNGKCGLR 444
           CKD +  CGLR
Sbjct: 621 CKDASSYCGLR 631


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,586
Number of Sequences: 438
Number of extensions: 3820
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)