Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15f01r
(929 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 336 2e-93
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 336 2e-93
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 336 2e-93
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 107 2e-24
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 62 1e-10
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 60 3e-10
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 3.8
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 27 5.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 5.0
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 26 8.7
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 336 bits (827), Expect = 2e-93
Identities = 154/201 (76%), Positives = 173/201 (86%)
Frame = -3
Query: 864 PLTSPCVFPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQ 685
P P PLQDVYKIGGIGTVPVGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLD 298
Query: 684 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 505
+PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PV
Sbjct: 299 AGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPV 358
Query: 504 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 325
LDCHTAHIACKFAE+ EK+DRR+GK E +PK +KSGDA I +VPSKP+CVE+F ++ P
Sbjct: 359 LDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAP 418
Query: 324 LGRFAVRDMRQTVAVGVIKAV 262
LGRFAVRDMRQTVAVGVIKAV
Sbjct: 419 LGRFAVRDMRQTVAVGVIKAV 439
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 336 bits (827), Expect = 2e-93
Identities = 154/201 (76%), Positives = 173/201 (86%)
Frame = -3
Query: 864 PLTSPCVFPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQ 685
P P PLQDVYKIGGIGTVPVGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLD 298
Query: 684 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 505
+PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PV
Sbjct: 299 AGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPV 358
Query: 504 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 325
LDCHTAHIACKFAE+ EK+DRR+GK E +PK +KSGDA I +VPSKP+CVE+F ++ P
Sbjct: 359 LDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAP 418
Query: 324 LGRFAVRDMRQTVAVGVIKAV 262
LGRFAVRDMRQTVAVGVIKAV
Sbjct: 419 LGRFAVRDMRQTVAVGVIKAV 439
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 336 bits (827), Expect = 2e-93
Identities = 154/201 (76%), Positives = 173/201 (86%)
Frame = -3
Query: 864 PLTSPCVFPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQ 685
P P PLQDVYKIGGIGTVPVGRVETGV+KPG IV FAPA +TTEVKSVEMHHE+L
Sbjct: 239 PTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMIVTFAPAGVTTEVKSVEMHHESLD 298
Query: 684 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 505
+PGDNVGFNVKNVSVK++RRG V GDSKN+PP G A FTAQVI+LNHPGQIS GY+PV
Sbjct: 299 AGLPGDNVGFNVKNVSVKDIRRGNVCGDSKNDPPMGCASFTAQVIILNHPGQISAGYSPV 358
Query: 504 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 325
LDCHTAHIACKFAE+ EK+DRR+GK E +PK +KSGDA I +VPSKP+CVE+F ++ P
Sbjct: 359 LDCHTAHIACKFAELIEKIDRRSGKKIEESPKFVKSGDACIAKMVPSKPMCVEAFTDYAP 418
Query: 324 LGRFAVRDMRQTVAVGVIKAV 262
LGRFAVRDMRQTVAVGVIKAV
Sbjct: 419 LGRFAVRDMRQTVAVGVIKAV 439
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 107 bits (257), Expect = 2e-24
Identities = 63/203 (31%), Positives = 108/203 (53%), Gaps = 2/203 (0%)
Frame = -3
Query: 861 LTSPCVFPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSV-EMHHEALQ 685
+ +P + P+ YK +GT+ G++E G +K + V+ P N T EV ++ + E +
Sbjct: 465 VNAPFIMPIASKYK--DLGTILEGKIEAGSIKKNSNVLVMPINQTLEVTAIYDEADEEIS 522
Query: 684 EAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPV 505
++ GD V V+ +++ GYV +KN P F AQ+ +L P ++ GY+ V
Sbjct: 523 SSICGDQVRLRVRGDD-SDVQTGYVLTSTKN-PVHATTRFIAQIAILELPSILTTGYSCV 580
Query: 504 LDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPP 325
+ HTA FA++ K+D+ T + ++ P G I L P+C+E F+++
Sbjct: 581 MHIHTAVEEVSFAKLLHKLDK-TNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQY 639
Query: 324 LGRFAVRDMRQTVAVG-VIKAVN 259
+GRF +RD TVAVG V+K ++
Sbjct: 640 MGRFTLRDQGTTVAVGKVVKILD 662
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 62.1 bits (144), Expect = 1e-10
Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 2/196 (1%)
Frame = -3
Query: 852 PCVFPLQDVYKIGGIGTVPVGRVETGVLKPGT--IVVFAPANITTEVKSVEMHHEALQEA 679
P + ++DV+ I G GTV GRVE G LK G +V +++ T V +EM + L A
Sbjct: 252 PFLMAIEDVFSISGRGTVVTGRVERGTLKKGAEIEIVGYGSHLKTTVTGIEMFKKQLDAA 311
Query: 678 VPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLD 499
V GDN G ++++ ++L+RG + P F A +L + T +D
Sbjct: 312 VAGDNCGLLLRSIKREQLKRGMIVAQPGTVAPH--QKFKASFYILTK--EEGGRRTGFVD 367
Query: 498 CHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLG 319
+ + + +++ ++ T + K + GD + P+ +E Q
Sbjct: 368 KYRPQLYSRTSDVTVEL---THPDPNDSDKMVMPGDNVEMICTLIHPIVIEKGQ------ 418
Query: 318 RFAVRDMRQTVAVGVI 271
RF VR+ TV ++
Sbjct: 419 RFTVREGGSTVGTALV 434
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 60.5 bits (140), Expect = 3e-10
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 1/200 (0%)
Frame = -3
Query: 864 PLTSPCVFPLQDVYKIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQ 685
P P + DVY+ TV GRVE G ++ ++ + VK+V + +
Sbjct: 400 PYRKPLRLSIDDVYRSPRSVTV-TGRVEAGNVQVNQVLYDVSSQEDAYVKNVIRNSDPSS 458
Query: 684 E-AVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTP 508
AV GD V + ++ V +LR G + + +N P + F A++ + G I +G T
Sbjct: 459 TWAVAGDTVTLQLADIEVNQLRPGDILSNYEN-PVRRVRSFVAEIQTFDIHGPILSGSTL 517
Query: 507 VLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFP 328
VL H+ + K+ K + + S K I L PLC+ +E P
Sbjct: 518 VL-----HLGRTVTSVSLKIVTVNNKRSR-HIASRKRALVRISFLDGLFPLCLA--EECP 569
Query: 327 PLGRFAVRDMRQTVAVGVIK 268
LGRF +R TVA G++K
Sbjct: 570 ALGRFILRRSGDTVAAGIVK 589
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 719 TSVVMLAGAKTTMVPGFNTPVSTLPTGTVPIPPILYTSC 835
+SVV+ + +T V + + VST TGTV +P +C
Sbjct: 86 SSVVLYSAKETVTVSSYWSLVSTSVTGTVYVPYTSSVAC 124
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 625 QFLDGHVLYVETYIVSRYSFLESFV 699
+F DGH+L ETY+ LES V
Sbjct: 527 KFFDGHLLASETYVGGHVESLESGV 551
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 5.0
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 2/98 (2%)
Frame = +2
Query: 602 SPAT*PRRNSLTDTFFTLKPTLSPGTASWRASWCISTDLTSVVMLAGAKT--TMVPGFNT 775
+P T + T +T P S A+ + S TS + + T + P +T
Sbjct: 525 TPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTST 584
Query: 776 PVSTLPTGTVPIPPILYTSCRGKTQGLVSGAGQVAGWH 889
PV+T T +LYTS + S + W+
Sbjct: 585 PVTT--TNCTTSTSVLYTSTPITSPNSTSSSSTQVSWN 620
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 8.7
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Frame = +2
Query: 218 SAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDSTH--RGLEGTKLTMAA 391
S +VTLPPPAS ++ T T T + S ++ G+ + +++ + ++++
Sbjct: 183 STDIVTLPPPAS-STSSFSTITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSVISSASLSS 241
Query: 392 SPDLMDFGLTSVDLPVRRSTFSLIS 466
S L +TS PV S+ SL S
Sbjct: 242 SSVLPTSIITSTSTPVTVSSSSLSS 266
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,830,629
Number of Sequences: 5004
Number of extensions: 81383
Number of successful extensions: 258
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -