Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15e24r
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1200 + 25234208-25234370,25238527-25238819,25240003-252402...    28   9.3  
08_02_1199 - 25209454-25210896,25211005-25211519,25211751-252119...    28   9.3  

>08_02_1200 +
           25234208-25234370,25238527-25238819,25240003-25240243,
           25240523-25240855,25240940-25241025,25241133-25242575
          Length = 852

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 724 YGLKTMFFITDDGVENLTFVPRT 656
           YG +T+FF+TDDG   L  +  T
Sbjct: 441 YGSRTIFFLTDDGTLRLLAIELT 463


>08_02_1199 -
           25209454-25210896,25211005-25211519,25211751-25211991,
           25215330-25215625,25216320-25216464
          Length = 879

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 724 YGLKTMFFITDDGVENLTFVPRT 656
           YG +T+FF+TDDG   L  +  T
Sbjct: 468 YGSRTVFFLTDDGTLQLLAIELT 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,300,977
Number of Sequences: 37544
Number of extensions: 241234
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)