Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15e24f
(599 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 31 0.13
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 29 0.69
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch... 27 1.6
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 27 2.1
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po... 26 3.7
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 3.7
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 26 4.8
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom... 26 4.8
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 25 6.4
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 25 6.4
SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22 |Schiz... 25 6.4
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -2
Query: 364 DFINCIYVFEVTTGMEFAHPDFILLRKSGHKEVRLACTNI*GKITTGFSNA 212
D++N + V+ G+E + + ++LR +GH V C NI I + F +A
Sbjct: 286 DYLNLVRVYTRPRGLEPDYSEPVILR-TGHSTVEDFCNNIHSSIKSQFKHA 335
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 28.7 bits (61), Expect = 0.69
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 495 LNSSIPLKMASRAVKPLSVFGPDNVSNVSGIKLL 394
L+SS+ K+ + +KP+ VFGP V + +K L
Sbjct: 5 LSSSVASKLVTLKLKPVVVFGPSGVGKSTLLKRL 38
>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 525
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +2
Query: 311 GKLHACSDFKNIYAVDEVYYVDEIKDVLKSLM 406
G ++ SD+ ++Y VDE+ + +++ +K L+
Sbjct: 308 GTYYSISDYTDVYGVDELQLFESLENCIKPLV 339
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 249 LVQASLTSLCPDFLRSMKSGWANSMPVVT--SKTYMQLMKSIMLMR*KMYSK 398
+VQ++LTS +++SG A S+PVVT + +L K I+ + M K
Sbjct: 423 IVQSNLTSAAMSNNSAIRSGSAASVPVVTINGRDIAELKKRIIQQKSGMIGK 474
>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 942
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 248 VSTGKSYLFVPRLPEEYEVWMGKL-HACSDFKNIYAVDEVYYVDE--IKDVLKSLMPETL 418
++TG ++F+P P E W +L ++ S + + + V E I L + PE +
Sbjct: 400 LATGADFVFIPERPAEVGKWQDELCNSLSSVRKLGKRKSIVIVAEGAIDSELNHISPEDI 459
Query: 419 LTL 427
L
Sbjct: 460 KNL 462
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -3
Query: 567 TAISSGVLITRNSAIMGNKDSLSTLNSSIPLKMASRAVKPLSVFGPDNVS 418
+A+ S T N I+ LST S+ P+ + PL P NVS
Sbjct: 707 SALVSATSPTTNVPIVPEAVHLSTAFSTAPVSTIVSNISPLPTVAPPNVS 756
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.8 bits (54), Expect = 4.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 452 LTAREAIFNGIDEFNVDNESLFPIIAELRVIKTP 553
L+ + + N + F +DNE+L I A IK+P
Sbjct: 187 LSMHQLVENSDETFCIDNEALSSIFANTLKIKSP 220
>SPBC16E9.17c |rem1||meiosis-specific cyclin
Rem1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = +3
Query: 300 KSGWANSMPVVTSKTYMQLMKSIMLM 377
+ W+N++P +T YM L+ + L+
Sbjct: 331 EENWSNTLPQITGYDYMSLVSYVHLL 356
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +3
Query: 429 LAQTQTVA*RPEKPFLMELMSSMWIMN 509
L+Q + R KPFL L S W N
Sbjct: 27 LSQRSKTSTRSSKPFLQRLFPSTWFKN 53
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = -2
Query: 430 RQCQQCFRHQTFEYIFYLINIIDFINCIYVFEVTTGMEFAHPDF 299
R CQ+C H + + +I F N IY PDF
Sbjct: 238 RSCQKCMEHFLYYGCLIIADIFQFHN-IYAMTTNAPNLLQDPDF 280
>SPBC1861.09 |ppk22||serine/threonine protein kinase Ppk22
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 6.4
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 10/36 (27%)
Frame = -2
Query: 352 CIYVFEVTTGMEFAH----------PDFILLRKSGH 275
C Y EVT +E+ H P+ ILL +SGH
Sbjct: 258 CFYAAEVTAALEYLHLMGFIYRDLKPENILLHQSGH 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,260
Number of Sequences: 5004
Number of extensions: 61132
Number of successful extensions: 184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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