Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15e24f
(599 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0120 + 6984482-6984643,6984748-6984797,6984936-6984996,698... 159 2e-39
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 52 5e-07
08_01_0007 - 57681-57728,58260-58336,58418-58464,58808-58908,590... 31 0.53
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78... 30 1.6
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164... 29 2.2
09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444 29 3.8
08_02_0251 - 14776308-14776495,14777624-14777708,14779125-147791... 28 6.6
07_03_0755 - 21261855-21261945,21262277-21262323,21262819-212630... 28 6.6
12_02_0811 - 23370455-23370472,23372279-23372538,23372645-233727... 27 8.7
05_06_0027 - 25029725-25030017,25030097-25030211,25030347-250305... 27 8.7
01_06_1243 - 35681569-35681712,35681799-35681904,35682054-356821... 27 8.7
01_06_1186 + 35223272-35224723,35225536-35225610,35226245-352265... 27 8.7
>02_02_0120 +
6984482-6984643,6984748-6984797,6984936-6984996,
6985574-6985669,6985754-6985903,6986208-6986339,
6986641-6986768,6987285-6987327,6987935-6988018,
6989049-6989090,6989264-6989334,6989621-6989674,
6989789-6989894,6990038-6990106,6990824-6990967,
6992038-6992113,6992295-6992353
Length = 508
Score = 159 bits (385), Expect = 2e-39
Identities = 87/188 (46%), Positives = 121/188 (64%), Gaps = 13/188 (6%)
Frame = +2
Query: 53 EVPLSLFATNRRRLANKLK-----SGQ----IVVLQGGEDVNHYDTDVQYVFRQEAYFTW 205
EVP+ L A NR RL L+ SG+ +V+LQGGE+ Y TD +FRQE+YF +
Sbjct: 19 EVPMELHAGNRDRLVAALRAHLSASGRPLRGLVLLQGGEEQTRYCTDHLELFRQESYFAY 78
Query: 206 VCGVREPGCYFALDVSTGKSYLFVPRLPEEYEVWMGKLHACSDFKNIYAVDEVYYVDEIK 385
+ GVREPG Y A+D+ +G+S LF PRLP +Y VWMG++ S FK+ Y VD V+YVDEI
Sbjct: 79 LFGVREPGFYGAIDIVSGQSILFSPRLPADYAVWMGEIKPLSYFKDRYKVDMVFYVDEIT 138
Query: 386 DVLKSLMPE----TLLTLSGPNTDSGLTAREAIFNGIDEFNVDNESLFPIIAELRVIKTP 553
VL+ + L L G NTDSG ++ A F G+++F+ D +L PI+ E RVIK+
Sbjct: 139 QVLQDRFSDHGKPLLFVLYGKNTDSGNYSKPASFEGMEKFDSDLSTLHPILTECRVIKSD 198
Query: 554 EEIAVMRY 577
E+A+++Y
Sbjct: 199 MELALIQY 206
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 51.6 bits (118), Expect = 5e-07
Identities = 39/164 (23%), Positives = 68/164 (41%)
Frame = +2
Query: 83 RRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYFALDVSTGK 262
R++L L + ++ E D V Y FRQ + ++ G +PG L TG
Sbjct: 123 RKKLLEVLPEKSLAIIASAEQQMMTDV-VPYSFRQNGDYLYITGCAQPGGVAVLSEETGL 181
Query: 263 SYLFVPRLPEEYEVWMGKLHACSDFKNIYAVDEVYYVDEIKDVLKSLMPETLLTLSGPNT 442
+F+P +E VW G+ +N + D+ + + E++ +L ++ + + T
Sbjct: 182 C-MFMPDTSKEDVVWQGQTAGVEAAENFFKADKAFPLSEMQKILPEMIERSKVVYHNVKT 240
Query: 443 DSGLTAREAIFNGIDEFNVDNESLFPIIAELRVIKTPEEIAVMR 574
S F N + + ELR IK+ EI +MR
Sbjct: 241 LSPSYKNLDSFRRA-SLNNKVKDIAYYTDELRWIKSKSEIGLMR 283
>08_01_0007 -
57681-57728,58260-58336,58418-58464,58808-58908,
59016-59108,59418-59540,59637-59755,60154-60510,
60888-61011
Length = 362
Score = 31.5 bits (68), Expect = 0.53
Identities = 13/41 (31%), Positives = 17/41 (41%)
Frame = -1
Query: 389 HLLSHQHNRLHQLHICF*SHYRHGVCPSRLHTPQEVWAQRG 267
H +H HN H +H ++ H P HTP RG
Sbjct: 49 HNHNHNHNHNHNIHNSHNHNHNHNAAPHPCHTPTPTPTPRG 89
>06_01_0094 +
779097-779155,779882-781019,781732-782115,782842-783060
Length = 599
Score = 29.9 bits (64), Expect = 1.6
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Frame = -3
Query: 264 DLPVLTSRAK*QPGSLTPQTHVK*ASCLNTYCTSVS*WFTSSPPCKTTICPLL--SLFAN 91
DLP+++S + S TP T +K + Y SVS SS ++ +L S A
Sbjct: 428 DLPLISSAVRWTASSRTPSTPIKFPAISRWYSVSVSTSINSSSNLFSSAAAVLRPSTAAC 487
Query: 90 LRRF--VANKDNGTSRVPGPIDHVAAMFDDII 1
L ++ + +D G + +DHV D++
Sbjct: 488 LVQYSMILERDAGAAVGAAVLDHVEESIRDML 519
>11_01_0209 -
1642473-1642579,1642783-1642826,1642935-1643023,
1643114-1643158,1643484-1643591,1643691-1643776,
1643917-1644004,1644211-1644387,1644720-1644795,
1644898-1644947,1645030-1645092,1645332-1645434,
1645513-1645615,1645731-1645791,1646268-1646308,
1646792-1646825
Length = 424
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = -2
Query: 436 WARQCQQCFRHQTFEYIFYLINIIDFINCIYVFE 335
WA++ Q F + +F ++N+++ I I+ FE
Sbjct: 378 WAQKRQDAFFFPGDQVVFLMLNVVELIGLIFTFE 411
>09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444
Length = 171
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 458 AREAIFNGIDEFNVDNESLFPIIAELRVIKTPE 556
A EA+ G D FN D +++ ++ ++ TPE
Sbjct: 43 AMEAVNGGADIFNEDQHAIYKLLGRIKSESTPE 75
>08_02_0251 -
14776308-14776495,14777624-14777708,14779125-14779160,
14779930-14780177,14780670-14780901,14781159-14781937,
14781987-14782155
Length = 578
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +2
Query: 320 HACSDFKNIYAVDEVYYVDEIKDVLKSLMPETLLTLSGPNTDSGLTAREAIFN 478
H K Y VDE ++E + L PE L + N + GL + A ++
Sbjct: 14 HEAKAKKRAYLVDEEVQIEEEEPPLVEPQPEPTLVVGATNEEQGLRSPIASYD 66
>07_03_0755 -
21261855-21261945,21262277-21262323,21262819-21263014,
21263239-21263340,21263602-21263678,21264037-21264236,
21264324-21264681,21265245-21265301,21265434-21266192,
21266287-21266468,21266651-21266813
Length = 743
Score = 27.9 bits (59), Expect = 6.6
Identities = 20/72 (27%), Positives = 32/72 (44%)
Frame = +2
Query: 59 PLSLFATNRRRLANKLKSGQIVVLQGGEDVNHYDTDVQYVFRQEAYFTWVCGVREPGCYF 238
PL A + + G+I VL GG+ V +DT Y R++ + T + G
Sbjct: 472 PLKSMAVGKSYASTVALDGKIFVLGGGDGVCWFDTVDCYDRRRDDWTTCPSFTHDKGSLA 531
Query: 239 ALDVSTGKSYLF 274
A+ + GK Y +
Sbjct: 532 AVSFN-GKIYAY 542
>12_02_0811 -
23370455-23370472,23372279-23372538,23372645-23372713,
23372979-23373105,23373187-23373422,23373509-23373678,
23373855-23373935,23374013-23374084,23374273-23374344,
23374450-23374588,23375141-23375643,23376817-23377010,
23377952-23378488
Length = 825
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 9 HRTWQRRGLWALALLKCRYLCSQQTD 86
HR W+RR L L LL C + QQ D
Sbjct: 9 HRRWRRRLLPKLMLLLCAVVHGQQPD 34
>05_06_0027 -
25029725-25030017,25030097-25030211,25030347-25030504,
25030582-25030682,25030846-25030994,25031089-25031239,
25031329-25031482,25032249-25032321,25032446-25032676
Length = 474
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 2/29 (6%)
Frame = -3
Query: 525 IMGNKDSLSTLNSSIPLKMASR--AVKPL 445
+M NKD+L+T+N+ IP ++ ++ V PL
Sbjct: 435 VMNNKDTLNTINNLIPKQLLNQIGGVNPL 463
>01_06_1243 -
35681569-35681712,35681799-35681904,35682054-35682149,
35682234-35682361,35683000-35683260,35683343-35683428,
35683524-35683616,35683720-35683815,35683946-35684300
Length = 454
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +3
Query: 216 LENPVVILP*MLVQASLTSLCPDFLRSMKSGWANSMPVVTSKTYMQLMKSIML 374
++NP++ L +V ++T D+L + + W + + ++ TY L K+ +L
Sbjct: 199 IQNPIINLKGFMVGNAVTDDYHDYLGTFEYWWTHGL--ISDNTYHNLKKTCLL 249
>01_06_1186 +
35223272-35224723,35225536-35225610,35226245-35226585,
35226621-35227005,35227131-35227559
Length = 893
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 150 FTSSPPCKTTICPLLSLFANLRRFVANKDNGTSRVPGP 37
FT+ P T + L L L+ V KDNG R+ P
Sbjct: 342 FTTRQPVTTVLGKLKELAKRLKLKVKKKDNGVLRLAAP 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,462,921
Number of Sequences: 37544
Number of extensions: 380031
Number of successful extensions: 824
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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