Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV15e24f
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical ...   152   2e-37
Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical pr...    31   0.63 
AL117195-4|CAB55010.1|  571|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF063007-3|AAC16431.2|  362|Caenorhabditis elegans Hypothetical ...    29   2.5  
AL032646-1|CAA21676.1|  385|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z99278-7|CAB16488.1|  382|Caenorhabditis elegans Hypothetical pr...    28   5.9  
X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase pro...    28   5.9  
U80836-15|AAB37898.1|  264|Caenorhabditis elegans Hypothetical p...    28   5.9  
AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF043701-7|AAK18972.1|  498|Caenorhabditis elegans Hypothetical
           protein K12C11.1 protein.
          Length = 498

 Score =  152 bits (368), Expect = 2e-37
 Identities = 88/196 (44%), Positives = 115/196 (58%), Gaps = 9/196 (4%)
 Frame = +2

Query: 26  TWSMGPGTLEVPLSLFATNRRRLANKLKS----GQIVVLQGGEDVNHYDTDVQYV-FRQE 190
           T+ +   T +VP+ LF  NR RL + LKS      +V+LQGG + N Y+TD   + FRQE
Sbjct: 2   TFQLSEKTFKVPVDLFTENRHRLVDALKSKVPANSVVLLQGGVEKNRYNTDAADLPFRQE 61

Query: 191 AYFTWVCGVREPGCYFALDV-STGKSYLFVPRLPEEYEVWMGKLHACSDFKNIYAVDEVY 367
           +YF W  GV E   Y A+DV S GK+ LF PRL   Y +W GK++    FK  YAVDEV 
Sbjct: 62  SYFFWTFGVNESEFYGAIDVRSGGKTTLFAPRLDPSYAIWDGKINNEQFFKEKYAVDEVV 121

Query: 368 YVDE---IKDVLKSLMPETLLTLSGPNTDSGLTAREAIFNGIDEFNVDNESLFPIIAELR 538
           + D+   I + LK L  + +  L   NTDSG    E  F G  +F +D E L+  +AELR
Sbjct: 122 FNDKTTTIAEKLKELSAKHVYLLRAENTDSGDVLAEPKFAGSGDFQLDTELLYKEMAELR 181

Query: 539 VIKTPEEIAVMRYVCK 586
           V+KT +EI VMRY  K
Sbjct: 182 VVKTEKEIGVMRYASK 197


>Z46676-3|CAA86663.1| 1244|Caenorhabditis elegans Hypothetical
           protein C08B11.3 protein.
          Length = 1244

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 21/84 (25%), Positives = 36/84 (42%)
 Frame = -2

Query: 586 LAYISHYSNFLWRFDNAQFCDNGK*GFIIHIELINSIKNGFSGRQATVCVWARQCQQCFR 407
           L YIS ++      D     D  K   +  +E++  +  GF G +A +C W         
Sbjct: 359 LVYISQHAILRIITDGIFSLDKFK--LVRSLEILTGLC-GFEGNEAIICDWLNSA----- 410

Query: 406 HQTFEYIFYLINIIDFINCIYVFE 335
             T  +IF ++ + D + C+Y  E
Sbjct: 411 --TIAHIFEVVGVKDIMMCVYTLE 432


>AL117195-4|CAB55010.1|  571|Caenorhabditis elegans Hypothetical
           protein Y57A10A.5 protein.
          Length = 571

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 19/69 (27%), Positives = 37/69 (53%)
 Frame = +2

Query: 365 YYVDEIKDVLKSLMPETLLTLSGPNTDSGLTAREAIFNGIDEFNVDNESLFPIIAELRVI 544
           + VD+ KD+++ L+   +LT    + + GL+    ++     +N  +E L PI+A+L   
Sbjct: 14  FAVDQTKDIIEPLVVAKVLTEFSESENDGLSCN--VY-----YNRFHEYLAPIMAKLEEY 66

Query: 545 KTPEEIAVM 571
           +  E + VM
Sbjct: 67  RIEERVLVM 75


>AF063007-3|AAC16431.2|  362|Caenorhabditis elegans Hypothetical
           protein R119.2 protein.
          Length = 362

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 1/106 (0%)
 Frame = +2

Query: 269 LFVPRLPEEYEVWMGKLHACSDFKNIYAVDEVYYVDEIKDVLKSLMPE-TLLTLSGPNTD 445
           LF  R     E+W G L   S+++      E      I   L+ +  + T +     + D
Sbjct: 15  LFADRRSAYDELWEGALPTESEWEKTAKFTECVPTSRILQTLEKVCDKGTAVFFDSTSDD 74

Query: 446 SGLTAREAIFNGIDEFNVDNESLFPIIAELRVIKTPEEIAVMRYVC 583
                 +A  N + E N         I   RVIK+P E++ MR VC
Sbjct: 75  LLYKFVQAKANSVREIN-------HFIERRRVIKSPSEMSSMRDVC 113


>AL032646-1|CAA21676.1|  385|Caenorhabditis elegans Hypothetical
           protein Y54E2A.2 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = -2

Query: 433 ARQCQQCFRHQTFEYIFYLINIIDFINC--IYVFEVTTGM 320
           +R+  +  RHQT +   Y++N   F++C  +Y F +  G+
Sbjct: 124 SREANEQSRHQTIQIDIYIVNHQIFLDCQPMYSFSIMEGL 163


>Z99278-7|CAB16488.1|  382|Caenorhabditis elegans Hypothetical
           protein Y53C12B.6 protein.
          Length = 382

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 22/98 (22%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
 Frame = +2

Query: 311 GKLHACSDFKNIYAVDE--VYYVDEIKDVLKSLMPETLLTLSGPNTDSGLTAREAIFNGI 484
           G + A +       VD   VY+   I+  +K+   E  +    PN  +GL +R+A     
Sbjct: 242 GSMRAAASSHAFKFVDNHIVYFKCNIRITVKNPSGECPVNNCSPNGSTGLISRKARDVFE 301

Query: 485 DEFNVDNESLFPII-AELRVIKTPEEIAVMRYVCKSHL 595
             F +  + + P+   E+ ++ T  E+ +     K+H+
Sbjct: 302 HPFLLLKQKVLPVFNKEINILVTSGELIIEEEQAKNHI 339


>X59156-1|CAA41870.1|   77|Caenorhabditis elegans transposase
           protein.
          Length = 77

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 430 RQCQQCFRHQTFEYIFYLINIIDFINCIYVFEV 332
           R+C   +    F++IF+  NI      +++FE+
Sbjct: 38  RRCFSAYFLNFFQFIFFFFNIFQLFYVVFLFEI 70


>U80836-15|AAB37898.1|  264|Caenorhabditis elegans Hypothetical
           protein B0432.1 protein.
          Length = 264

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 397 FEYIFYLINIIDFINCIYVFEVTTGMEFAHPDFI 296
           F  IFY I I D ++CI +F +T      H D +
Sbjct: 60  FYRIFYYIGIADVLHCICLFWMTFQKYVIHGDIL 93


>AF047657-8|AAK18944.1|  328|Caenorhabditis elegans Hypothetical
           protein F37B4.10 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -3

Query: 510 DSLSTLNSSIPLKMASRAVKPLSVFGPDNVSNVSG 406
           +SL    + +P+ M S A  PL+ F PD V N +G
Sbjct: 172 ESLQIKANIMPVSMPSTADGPLNRFSPDLVENDAG 206


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,325,520
Number of Sequences: 27780
Number of extensions: 350063
Number of successful extensions: 891
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)