Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV15e20f
(609 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 55 7e-09
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 31 0.17
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 26 3.7
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 26 3.7
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 26 3.7
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 26 5.0
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 6.5
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 6.5
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 55.2 bits (127), Expect = 7e-09
Identities = 43/175 (24%), Positives = 74/175 (42%), Gaps = 6/175 (3%)
Frame = +3
Query: 3 WSLVAGIPFLSFYDVSGQLSYQEEKLFNAVEKNKK---GVPGCIKWSKKPDLNGYTNGIP 173
W + + I L+ Y+ G L E + A+ + G C P N
Sbjct: 88 WCVCSNIRELTIYERKGFLKQSPEAVEKAIYSHLPFYLGGDKCTVHVTNPCSPDEKNQND 147
Query: 174 AHKIVVNIFSCQNGRSTI---TQCIKEMCEEKIPYNRKSDQITAQEFDDVISAVYPSIPD 344
+ V++ + ++GR I T+ + ++C +K+ S Q+T + D + IP+
Sbjct: 148 CVDLKVHLIAKEDGRDAIIDLTRGLADLCTKKVI---SSTQVTLELIDKELKESV--IPE 202
Query: 345 PDLALFSGPVCCTHGLLPWQIRLTEFISLSVDYNLSVESFVGAMYKYSKCDQRFG 509
PDL + P+ G PWQ+RL E + Y + +F A+ YS + R G
Sbjct: 203 PDLLIIFAPLLKLQGFPPWQLRLCEIFHDPILYTTNYLTFFKALVHYSNAEMRLG 257
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 30.7 bits (66), Expect = 0.17
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Frame = -1
Query: 225 LWNVRSDKKKYSQQFYVQE----CHLYTHSNQVSLTILYTPEH---LSCSSQLH*KVFLL 67
LW++++DKK + V++ L +HS V T ++P++ LSCS +++ +
Sbjct: 350 LWSIKADKKSLPKSTSVEDSDGSVRLLSHSGPVYGT-TFSPDNKYLLSCSEDASARLWSV 408
Query: 66 DMKVDLIHHK 37
D K L+ +K
Sbjct: 409 DTKTALVAYK 418
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -3
Query: 163 FVYPFKSGFFDHFIHPGTP 107
FV K F+ HF+H G P
Sbjct: 1511 FVQDIKKSFYKHFLHSGFP 1529
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 3.7
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 394 NKPCVQQTGPENNAKSGSGMEGYTADITSSNSCAVIWSLFLLYGIFSSHISLIHCVI 224
N P G E+N S S + T S +S A +W+L + H S + V+
Sbjct: 88 NSPSYYLFGHESNICSASALNSETIITGSWDSTARVWALGQCKYVLKGHQSSVWAVL 144
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 561 IYLGLVLNLIYYHFQVTFQIFDRIYYIYT 475
IY+GLV +++Y F+ +F +Y+ T
Sbjct: 325 IYIGLVYSILYLWFEAFPILFTTVYHFTT 353
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.8 bits (54), Expect = 5.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 527 ITSKLRSKSLIAFTIFIHSTYKAFNT 450
I +LRS +F+IF+HST F++
Sbjct: 44 ICERLRSDVQTSFSIFLHSTVVGFDS 69
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Frame = +3
Query: 297 QEFDDVISAVYPSIPDP----DLALFSGPVCCT 383
Q +D + AVYP +P P D+ + S P T
Sbjct: 469 QNYDSTVPAVYPYMPPPFSGSDMNVMSNPAADT 501
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.4 bits (53), Expect = 6.5
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +3
Query: 138 KPDLNGYTNGIPAHKIVVNIFSCQNGRSTITQCIKEMCEE---KIPY-NRKSDQITAQEF 305
+P LNG + IPA V + + G+STI + + + KI N++ DQIT
Sbjct: 456 RPILNGCSFNIPAGAKVAFVGASGCGKSTILRLLFRFYDTDSGKILIDNQRLDQITLNSL 515
Query: 306 DDVISAVYPSIP 341
I V P
Sbjct: 516 RKAIGVVPQDTP 527
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.0 bits (52), Expect = 8.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +3
Query: 381 THGLLPWQIRLTEFISLSVDYNLSVESFVGAMYKYS 488
+H L R T+FI S D + S E+ ++Y YS
Sbjct: 240 SHEKLDLPYRTTDFIPYSKDLSTSPEAHRTSIYSYS 275
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,115
Number of Sequences: 5004
Number of extensions: 57251
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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